Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0101
         (448 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148...    57   7e-09
02_05_1152 + 34494423-34494586,34494725-34494781,34494851-344949...    30   0.74 
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502...    28   3.0  

>02_01_0003 +
           13079-13610,14005-14312,14364-14549,14620-14707,
           14807-14887,14980-15044,15357-15497,15578-15694,
           15995-16237,16326-16383,18127-18224
          Length = 638

 Score = 56.8 bits (131), Expect = 7e-09
 Identities = 25/46 (54%), Positives = 32/46 (69%)
 Frame = +1

Query: 61  NAEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPTATF 198
           +A ++ +L++FVE CK  P LL  P LAFF+DYL SLG  LP A F
Sbjct: 227 DASRVGELRTFVEACKKDPSLLADPNLAFFRDYLESLGAHLPAAAF 272


>02_05_1152 +
           34494423-34494586,34494725-34494781,34494851-34494908,
           34494989-34495088,34495270-34495383,34495588-34495810,
           34496112-34496246,34496575-34496679,34496906-34497001,
           34497387-34497516,34497933-34497983,34498538-34498648,
           34499267-34499376,34499490-34499655,34499740-34499820,
           34499907-34499975,34500099-34500212,34500699-34500760,
           34500894-34500990,34501152-34501271
          Length = 720

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 16  HEGLRNLQRKMSCPYNAEQLDQLKSFVEICKTQPQLLHHP 135
           H+GL N +  ++C     Q  ++ + +E+C   P  LH P
Sbjct: 393 HQGLGNTRILLTCQDLTSQCLEVPNMLELCGLDPHKLHRP 432


>07_03_1575 -
           27848977-27849095,27849254-27849302,27850270-27850287,
           27850798-27851786,27852119-27852733,27852893-27852921,
           27853990-27854453,27854530-27854654,27854743-27855025,
           27855112-27856102,27856965-27857576,27857666-27858630
          Length = 1752

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 176 TPRDIR*SLKNANCGWCNSC 117
           T + +   L+   CGWCNSC
Sbjct: 756 TDQKLSVELRKEKCGWCNSC 775


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,831,160
Number of Sequences: 37544
Number of extensions: 166160
Number of successful extensions: 356
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)