Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0101
         (448 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14144| Best HMM Match : MFS_1 (HMM E-Value=0.047)                   27   5.3  
SB_21494| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  

>SB_14144| Best HMM Match : MFS_1 (HMM E-Value=0.047)
          Length = 355

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 124 IVAAVFYIFPQRISTG-LIAQRCTGNSFFFVGFVIPRA 14
           + A   Y   + I++G LI    T N FFF+GF+ P+A
Sbjct: 281 MAAECTYPVAEGITSGVLILSVYTFNLFFFIGFMFPQA 318


>SB_21494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 110 HSRNYYTIHNWRFLRII 160
           H R+YY   NW FLR++
Sbjct: 86  HLRDYYDYINWAFLRVL 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,520,035
Number of Sequences: 59808
Number of extensions: 189455
Number of successful extensions: 405
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)