Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0101
         (448 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   1.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   6.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   8.1  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 110 VLHISTKDFNWSNCSALYGQLIFLC 36
           ++ +  K + W + S L G   FLC
Sbjct: 380 LVSLDKKQYTWRHTSVLIGWSAFLC 404


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -3

Query: 122 SCGCVLHISTKDFNWSNCSALYGQL 48
           S G +LHI   +     C   YG +
Sbjct: 109 SAGSLLHICMLELGHEVCGRFYGNI 133


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -3

Query: 146 NANCGWCN 123
           N NCGW N
Sbjct: 150 NCNCGWKN 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,258
Number of Sequences: 438
Number of extensions: 2095
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)