BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NRPG0101 (448 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to te... 53 1e-07 At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi... 51 3e-07 At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 27 7.6 At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 27 7.6 >At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to tetratricoredoxin [Arabidopsis thaliana] GI:18041544; similar to SP|Q42443 Thioredoxin H-type (TRX-H) (Phloem sap 13 kDa protein-1) {Oryza sativa}; contains Pfam profile: PF00085 Thioredoxin Length = 380 Score = 52.8 bits (121), Expect = 1e-07 Identities = 36/129 (27%), Positives = 51/129 (39%) Frame = +1 Query: 61 NAEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPTATFGAKDFTAAGDXXXX 240 +A Q+ +L+ FVE K P +LH P L FFK+YL SLG +P +D+ + Sbjct: 3 DAIQVAELRRFVEQLKLNPSILHDPSLVFFKEYLRSLGAQVPKIEKTERDYEDKAE--TK 60 Query: 241 XXXXXXXXXXXXXXXXXXXXLDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXA 420 LD V+ PD + Q MGDP A Sbjct: 61 PSFSPKHDDDDDDIMESDVELDNSDVVEPD-NEPPQPMGDPTAEVTDENRDDAQSEKSKA 119 Query: 421 MRAFSEQKY 447 M A S+ ++ Sbjct: 120 MEAISDGRF 128 >At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing protein similar to Hsc70-interacting protein (Hip) from {Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503; contains Pfam profile PF00515: tetratricopeptide repeat (TPR) domain Length = 441 Score = 51.2 bits (117), Expect = 3e-07 Identities = 21/43 (48%), Positives = 31/43 (72%) Frame = +1 Query: 61 NAEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPT 189 ++ +L +LK F++ CK+ P LL P L+FF+DYL SLG +PT Sbjct: 2 DSTKLSELKVFIDQCKSDPSLLTTPSLSFFRDYLESLGAKIPT 44 >At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative very strong similarity to SP|P11574 Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) {Arabidopsis thaliana}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF00306: ATP synthase ab C terminal, PF02874: ATP synthase alpha/beta family beta-barrel domain Length = 487 Score = 26.6 bits (56), Expect = 7.6 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = +1 Query: 55 PYN--AEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPTATFGAKDFTAAG 225 P+N A Q+ + V+ + LL H + F ++GV++ TA F +DF G Sbjct: 171 PHNEIAAQICRQAGLVKRLEKSDNLLEHQEDDNFAIVFAAMGVNMETAQFFKRDFEENG 229 >At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative very strong similarity to SP|P11574 Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) {Arabidopsis thaliana}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF00306: ATP synthase ab C terminal, PF02874: ATP synthase alpha/beta family beta-barrel domain Length = 487 Score = 26.6 bits (56), Expect = 7.6 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = +1 Query: 55 PYN--AEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPTATFGAKDFTAAG 225 P+N A Q+ + V+ + LL H + F ++GV++ TA F +DF G Sbjct: 171 PHNEIAAQICRQAGLVKRLEKSDNLLEHQEDDNFAIVFAAMGVNMETAQFFKRDFEENG 229 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,052,392 Number of Sequences: 28952 Number of extensions: 136421 Number of successful extensions: 305 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 304 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 305 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 722638680 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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