Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0100
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0038 - 15778446-15778577,15778685-15779020,15779106-157792...    31   0.75 
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012...    30   1.7  
07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758     28   7.0  
01_06_0268 - 28026512-28026682,28026782-28026919,28027151-280273...    28   7.0  
09_06_0056 - 20561645-20561920,20562024-20562611,20562698-205630...    28   9.3  
08_01_0081 - 574119-575204,575794-576191,576321-576382,576581-57...    28   9.3  
04_04_1634 + 34937087-34937198,34937652-34937790,34938263-349383...    28   9.3  

>06_03_0038 - 15778446-15778577,15778685-15779020,15779106-15779225,
            15779280-15779765,15779861-15779994,15780111-15780230,
            15784881-15785018,15785404-15786079,15786179-15786340,
            15786424-15786618,15786839-15787084,15787758-15787952
          Length = 979

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
 Frame = +1

Query: 121  HHF--RQRVLKIYSHSVN*FVPKAYLKMDDFGDSFVE-PEVDPAAD----FLAREQNQLA 279
            HH+   Q+VLK  S     F+PK + K  ++   FV+ P++ P ++    ++ R   +  
Sbjct: 865  HHYPLAQKVLKRLSDGFQSFMPKVFKKFGNYHREFVKCPKMVPCSNDCAVYVIRYMERYQ 924

Query: 280  GLEDELETSAPPP 318
            G  D+L     PP
Sbjct: 925  GNPDKLADDFQPP 937


>07_03_1762 -
           29299328-29299437,29299782-29299871,29300487-29301291,
           29301956-29303278
          Length = 775

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +1

Query: 199 DDFGDSFVEPEVDPAADFLAREQNQLAGLEDE---LETSAPPP 318
           ++ GD   EPE +  ADF+  E+ +   LEDE    E  AP P
Sbjct: 56  EEGGDDEAEPEDESDADFVGDEEEEEEDLEDEDDLEEVKAPRP 98


>07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758
          Length = 223

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 746 RKRATSLPRRGPKSQSSETRAHSFPSSTLLSDPRACARS 630
           R RAT+     P+  S++ +AHSF S      P A AR+
Sbjct: 3   RPRATTAAASRPRRASTKPKAHSFLSPVAPPPPSARARA 41


>01_06_0268 -
           28026512-28026682,28026782-28026919,28027151-28027366,
           28027488-28027564,28027845-28028448
          Length = 401

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = -3

Query: 730 PFLDGVQSHKAQKPGPIHFLPPHYFQILELVLALHSCWQL*F----WKSVLHVICTSPPV 563
           P L    + + ++ GP+H LPP    +    LAL + W L +    W +V+ V+C +   
Sbjct: 100 PALPSSAAGRRRREGPLHALPPRP-PLAAGALAL-AAWALSYLVLAWHTVVDVVCFTLTA 157

Query: 562 LSWLSEA 542
            S + +A
Sbjct: 158 ASLMGDA 164


>09_06_0056 -
           20561645-20561920,20562024-20562611,20562698-20563055,
           20563149-20563483,20563593-20563633,20563722-20563932,
           20564289-20564348,20564432-20564457,20565066-20565264
          Length = 697

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +2

Query: 566 WRTGTNHMKNRFPKLKLPTGMQSE-HKLEDLKVVWRKEMNGPGFLSFVTLDPVEEGMWHA 742
           W  G N    +  K K  TG+  +   + + +V+W+     PG L+F  L    +  WH 
Sbjct: 579 WAYGMNIFDLKEWKKKDITGIYHKWQSMNEDRVLWKLGTLPPGLLTFYKLTHPLDKSWHV 638

Query: 743 YG 748
            G
Sbjct: 639 LG 640


>08_01_0081 -
           574119-575204,575794-576191,576321-576382,576581-576653,
           576754-576824,576961-577148,577230-577377,577465-577503,
           577601-577656,577745-577798,577900-578003,578117-578217,
           578726-578796,578912-578968,579306-579422,579653-579682
          Length = 884

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 601 KSVLHVICTSPPVLSW 554
           K+VLH+ C  PP +SW
Sbjct: 10  KAVLHMDCEKPPAISW 25


>04_04_1634 +
           34937087-34937198,34937652-34937790,34938263-34938334,
           34938414-34938546,34938591-34938730,34939478-34939585,
           34939650-34939720,34940297-34940545,34940618-34940823,
           34940894-34941026,34941099-34941101,34941136-34941293,
           34941420-34941683,34941869-34942114
          Length = 677

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 133 QRVLKIYSHSVN*FVPKAYLKMDDFGDSFVEPEVDPAADFLAREQNQLAGLEDE 294
           Q ++++ S + N   P   L + DF  +F+  ++ P   +L R   Q   L+DE
Sbjct: 193 QNLVQLRSTAHNGLCPSPRLNVGDFSYNFLVGKIPPCLKYLPRSSFQGNCLQDE 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,273,483
Number of Sequences: 37544
Number of extensions: 397669
Number of successful extensions: 1315
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)