Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0100
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10079| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.14 
SB_55350| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)                       30   1.8  
SB_6481| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_13048| Best HMM Match : Fork_head (HMM E-Value=0)                   30   1.8  
SB_56828| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_35033| Best HMM Match : GST_C (HMM E-Value=0.08)                    29   3.1  
SB_31408| Best HMM Match : ENTH (HMM E-Value=0)                        29   3.1  
SB_1490| Best HMM Match : fn3 (HMM E-Value=1.9e-20)                    29   3.1  
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)                 29   5.4  
SB_10292| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_35222| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_52582| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-39)                 28   9.5  
SB_13716| Best HMM Match : LIM (HMM E-Value=0)                         28   9.5  

>SB_10079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +1

Query: 673 GNEWARVSELCDFGP---RRGRDVARLRSIVL 759
           G EW +V   CDF P   +  +DV+R+RSI L
Sbjct: 18  GTEWEKVCRACDFNPKATKNTKDVSRMRSIFL 49


>SB_55350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = -3

Query: 250 NLLLDRPQVQRNCLQNHPFSNKLLEQIN*QNESRFSTLFDENDERINKL 104
           N+++  P V ++  ++H F  +   +   ++ESR +TL D N++  +KL
Sbjct: 49  NMVISSPSVSQSLSESHKFDIEGFGESVKESESRIATLQDSNEKLCDKL 97


>SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)
          Length = 1388

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -2

Query: 755 TIDRKRATSLPRRGPKSQSSETRAHSFPSSTLLSDPRACARS 630
           TI R   T+LP   P S++  +R  +  SST+L+  RA  R+
Sbjct: 550 TISRNSLTNLPADSPTSRNPRSRESAKRSSTVLNSVRAKKRN 591


>SB_6481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +1

Query: 151 YSHSVN*FVPKAYLKMDDFGDSFVEPEVDPAADFLAREQNQLAGLEDEL 297
           +S S + F     L ++D+GD+  + + DP+   L  +  ++AG +D+L
Sbjct: 10  WSESDSRFFADNLLGVEDWGDAISDIKFDPSEVLLGEKDVEMAGTDDDL 58


>SB_13048| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 311

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = +2

Query: 587 MKNRFP--KLKLPTGMQS-EHKLE--DLKVVWRKEMNGPGFLSFVTLDPVEEGMW 736
           +K RFP  + K P+   S  H L   D  V   +E   PG  ++ TLDP  EGM+
Sbjct: 94  IKRRFPYYREKFPSWQNSIRHNLSLNDCFVKMPREPGNPGKGNYWTLDPASEGMF 148


>SB_56828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 525

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +1

Query: 412 LGSTPTTVFKQEREE 456
           +G TP T+FKQEREE
Sbjct: 209 IGETPVTIFKQEREE 223


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 716 GPKSQSSETRAHSFPSSTLLSDPRACARSA 627
           GP+++SS TR  SFPSS +      C RS+
Sbjct: 470 GPRNKSSITRVASFPSSLISDIFGGCLRSS 499


>SB_35033| Best HMM Match : GST_C (HMM E-Value=0.08)
          Length = 240

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +2

Query: 626 MQSEHKLEDLKVVWRKEM---NGPGFLSFVTLDPVEEGMWHAYGQL 754
           M ++ +L D    WR  +   N PG    V LD ++ G W  + Q+
Sbjct: 178 MCNKKRLSDFPNTWRHTLDIYNMPGIADTVNLDHIKAGYWEGFPQV 223


>SB_31408| Best HMM Match : ENTH (HMM E-Value=0)
          Length = 1080

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +1

Query: 235 DPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDA 408
           DP ADF +    +  G  D  + +A     ++++  F DF +  S+SA  +N + DD+
Sbjct: 720 DPFADFQSASPVKSEGFADFTQATA-----ASTSEVFGDFADFKSSSATQSNNISDDS 772


>SB_1490| Best HMM Match : fn3 (HMM E-Value=1.9e-20)
          Length = 421

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
 Frame = +2

Query: 620 TGMQSEHKLEDLKVVWRKEMNGPGFLSFVT-------LDPVEEGMWHA 742
           TG+ S+  + D++V  +    GPG +S  T       L P+E+G WHA
Sbjct: 6   TGLFSDEGV-DVRVEGKAPSKGPGIISSTTNSSITLELKPIEKGHWHA 52


>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
          Length = 4607

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 262  EQN-QLAGLEDELETSAPPPAISTSTNGFDDF 354
            EQN +L  L+D L  S+P PA+  S N FDD+
Sbjct: 3654 EQNSRLKALKD-LMWSSPDPAVKLSLNPFDDY 3684


>SB_10292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 286 EDELETSAPPPAISTSTNGFDDFVEVP 366
           E E+ET+ P     +S + FDDF+  P
Sbjct: 29  ESEIETTPPKTTTQSSIDSFDDFLNPP 55


>SB_35222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 661 SVEEGNEWARVSELCDFG 714
           SV+EG +W R S L DFG
Sbjct: 154 SVKEGRKWQRTSPLSDFG 171


>SB_52582| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-39)
          Length = 587

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +1

Query: 187 YLKMDDFGDSFVEPEVDPAADFLAREQNQLAGLEDELETSAPPPAISTST 336
           YL++D  G+S +  + D  ++F + + +   GL+ E   +   PA+  ST
Sbjct: 119 YLRLDRPGNSSLTLDDDDLSEFGSGKVDAALGLDTEFSGNGSEPAVYNST 168


>SB_13716| Best HMM Match : LIM (HMM E-Value=0)
          Length = 401

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +1

Query: 226 PEVDPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDD 405
           P + P  DF A EQ+         E   PPP +   T   +    V +A+  + + LL+D
Sbjct: 54  PPLPPPPDFDALEQDNSHHHHHGKEELPPPPPLPDLTTPSNTTSTVLAANLSELDSLLED 113

Query: 406 APLGSTPTT 432
                 P+T
Sbjct: 114 LGKPQYPST 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,011,447
Number of Sequences: 59808
Number of extensions: 436585
Number of successful extensions: 1206
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)