Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0099
(387 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 31 0.083
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 27 1.4
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c... 26 2.4
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 2.4
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 25 5.5
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 5.5
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc... 25 5.5
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 7.2
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi... 24 9.6
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 24 9.6
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 30.7 bits (66), Expect = 0.083
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +1
Query: 88 DSQSENQALLRIEEVACDDVSTISPIGPDELPPPYQQVGMPMVSCRVCQALIDIRGKKEQ 267
DS E Q L I++++ D+ +S +ELP Q + ++ + + IDI K++
Sbjct: 622 DSLKEKQNLFAIQDISLDEPQRLSLYELEELPTGLLQSSILFITLNLIEMAIDIYFKEQA 681
Query: 268 HV 273
+
Sbjct: 682 FI 683
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 26.6 bits (56), Expect = 1.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -3
Query: 184 EATHRAQLGRLCSHHHMRPLQF---SAKLDFHFGCPPLWLSTKILHN 53
+ R + + H + LQ+ SAK +++F P LWL+ K++ N
Sbjct: 124 DVKERKVKAKAITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGN 170
>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 248
Score = 25.8 bits (54), Expect = 2.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 172 DELPPPYQQVGMPMVS 219
D LPPPYQ + +P V+
Sbjct: 221 DSLPPPYQVLSVPSVT 236
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.8 bits (54), Expect = 2.4
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +1
Query: 163 IGPDELPPPYQQVGMPMVSCRVCQALIDIRGKK 261
+ P +P PYQ + + R + +D+ KK
Sbjct: 305 LDPSRIPSPYQPSSLQPLESRKLHSKVDVHSKK 337
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 24.6 bits (51), Expect = 5.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 249 SWEKRATCSEMFRMQRSYAYKECSARQEVCSVPLQL 356
+WE+ SEM ++ + YKE S+ Q ++P+ L
Sbjct: 250 NWEEAGLPSEMLKVLKKVNYKEPSSIQR-AAIPVLL 284
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 24.6 bits (51), Expect = 5.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -2
Query: 314 FFIGVASLHSEHFTTCCSFFPRMSISAWHTRQ 219
FF G+A F CC FP + + HT Q
Sbjct: 1694 FFGGMACCLGPAFGLCCKKFPSIFAAIAHTIQ 1725
>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 413
Score = 24.6 bits (51), Expect = 5.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 112 KLDFHFGCPPLWLSTKILHNYANDA*FGNCSSCRFL 5
KLDF ++ T H+Y + F + SS RFL
Sbjct: 216 KLDFLKHACTMFRGTHRFHSYTTEKGFSDASSRRFL 251
>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 24.2 bits (50), Expect = 7.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 278 FTTCCSFFPRMSISAWHTR 222
F+T CS F + ++ WH R
Sbjct: 249 FSTWCSIFQKYLMNNWHLR 267
>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
Hat1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/48 (20%), Positives = 18/48 (37%)
Frame = -3
Query: 151 CSHHHMRPLQFSAKLDFHFGCPPLWLSTKILHNYANDA*FGNCSSCRF 8
C + + + ++ DFH W+++KI F C F
Sbjct: 251 CDYKRLLSMGIFSEPDFHPSLSRQWINSKIAETKLTQRQFSRCCELAF 298
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 23.8 bits (49), Expect = 9.6
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 121 IEEVACDDVSTISPIGPDELPPPYQQ 198
+++ + +IS I PD++PPPY +
Sbjct: 1022 MQKAMLSTLKSISAI-PDDVPPPYSE 1046
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,800,713
Number of Sequences: 5004
Number of extensions: 37310
Number of successful extensions: 100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -