Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0099
(387 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0015 + 27065104-27065428,27065539-27066257 29 0.97
04_04_0339 - 24513699-24516827 29 0.97
08_02_0306 - 15599409-15599657,15600326-15600475,15600574-156006... 28 3.0
04_04_0308 + 24286923-24286927,24288430-24288907,24288980-242890... 28 3.0
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 28 3.0
01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110 28 3.0
06_03_0163 - 17380601-17380710,17380796-17380856,17381076-173811... 27 3.9
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 27 3.9
10_08_0452 - 18038182-18038253,18038338-18038415,18038502-180385... 27 6.9
08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967... 27 6.9
02_02_0632 - 12413660-12413677,12413839-12413870,12414377-124144... 27 6.9
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508... 26 9.1
03_06_0289 - 32870581-32871238,32871271-32871275 26 9.1
02_01_0759 - 5628913-5630870,5631023-5631047 26 9.1
>05_07_0015 + 27065104-27065428,27065539-27066257
Length = 347
Score = 29.5 bits (63), Expect = 0.97
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 142 DVSTISPIGPDELPPPYQQVGMPMVSCRVCQALIDIRGKK 261
D S ++ P ELPPP VG P+ +LID GK+
Sbjct: 55 DDSPVTTTFPKELPPPPAAVGPPIFMASATTSLID-HGKE 93
>04_04_0339 - 24513699-24516827
Length = 1042
Score = 29.5 bits (63), Expect = 0.97
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 211 MVSCRVCQALIDIRGKKEQHVVKCSE 288
++ C C+ L ++RG +E H+ +C+E
Sbjct: 951 LLECSECEGLRELRGIEELHISRCTE 976
>08_02_0306 -
15599409-15599657,15600326-15600475,15600574-15600663,
15600776-15601126,15601389-15601430,15601523-15601600
Length = 319
Score = 27.9 bits (59), Expect = 3.0
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -3
Query: 136 MRPLQFSAKLDFHFGCP-PLWLSTK 65
+R F KL+ HFGCP +W S K
Sbjct: 225 IRAAPFIEKLEVHFGCPHHVWFSDK 249
>04_04_0308 +
24286923-24286927,24288430-24288907,24288980-24289099,
24289182-24289235,24289467-24289579,24289799-24290011,
24290123-24290201,24290323-24290376,24290448-24290522,
24291029-24291193,24291843-24291941,24292186-24292241,
24292331-24292433,24293289-24293417,24293657-24293835,
24293953-24293977,24294060-24294175,24294252-24294342
Length = 717
Score = 27.9 bits (59), Expect = 3.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 370 CKLVGNCKGTEHTSCL 323
CK G C G++HT C+
Sbjct: 599 CKRTGGCSGSQHTPCI 614
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 27.9 bits (59), Expect = 3.0
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 191 YGGGNSSGPIGEIVLTSSHATSSILSKA*FSL 96
+G GP GE++ T+ H ++I+++ +SL
Sbjct: 287 WGHSTLVGPFGEVIATAEHEETTIMAEIDYSL 318
>01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110
Length = 215
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 198 SRDAYGLLPSVPSTD*HSWEKRATCSEMFRMQRSYAYKECSARQE-VCSVPLQLPTN 365
+R+ +G +P++ D WE RA C + R + K+ ++ + V L++ +N
Sbjct: 48 ARNPFGQVPALQDGDLFLWESRAICKYVCRKNKPELLKDGDLKESAMVDVWLEVESN 104
>06_03_0163 -
17380601-17380710,17380796-17380856,17381076-17381150,
17381538-17381600,17381679-17381755,17382432-17382515,
17382610-17382654,17382729-17382789,17383658-17384053,
17384220-17384289,17387010-17387083,17387202-17387246,
17387342-17387391,17387846-17387947,17388587-17388620,
17388681-17388758,17388915-17388965,17389082-17389085,
17389182-17389256,17389530-17389624
Length = 549
Score = 27.5 bits (58), Expect = 3.9
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +1
Query: 58 VKFL*KATMGDSQSENQALLRIEEVACDDVSTISP-IGPDELPPPYQQVGMPMVSCRVCQ 234
+++L +G ++ Q L+ +++ A VS S I P PP+ VGMP +S + Q
Sbjct: 106 IRWLSSTAIGPARLLWQQLIGLQQQAMGTVSACSSWIRPTARFPPHLVVGMPALSPTMNQ 165
Query: 235 ALIDIRGKKEQHVVKCSE 288
I K+E ++ +
Sbjct: 166 GNIAKWRKQEGEKIEVGD 183
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 27.5 bits (58), Expect = 3.9
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 130 VACDDVSTISPIGPDELPPPYQQVGMPMVSCRVCQALIDIRGKKEQHVVKCSE 288
++C VS+ PP+Q++GMP +S + + I KKE V E
Sbjct: 1601 LSCGQVSSARSFSSSADLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGE 1653
>10_08_0452 -
18038182-18038253,18038338-18038415,18038502-18038579,
18039112-18039168,18039276-18039349,18039424-18039495,
18039609-18039670,18039861-18039962,18040378-18040490,
18040809-18040940,18041156-18041243,18041617-18041711,
18041793-18042023,18042567-18042680,18042765-18042866,
18043091-18043207,18043301-18044146
Length = 810
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/47 (21%), Positives = 25/47 (53%)
Frame = +1
Query: 139 DDVSTISPIGPDELPPPYQQVGMPMVSCRVCQALIDIRGKKEQHVVK 279
+D+ + + + PP++ + + + +AL + G++E+HV K
Sbjct: 233 EDLLATVYLSANRIAPPHEGTELGIGDASIIRALAEAYGRREEHVKK 279
>08_02_1540 + 27694565-27694579,27696364-27696447,27696599-27696731,
27696840-27696951,27697530-27697629,27697810-27697937,
27698046-27698115,27698548-27698636,27698719-27698764,
27698854-27698924,27699002-27699075,27699341-27699433,
27699539-27699572,27699704-27699789,27702147-27702223,
27702445-27702533,27702630-27702813,27703068-27703249,
27703962-27704064,27704159-27704490,27704577-27705018,
27705749-27705846,27706988-27707081,27707666-27707787,
27708025-27708078,27708185-27708304,27708595-27708799,
27708889-27709059,27709155-27709310,27709375-27709431,
27709474-27709580,27709708-27709798,27709931-27710072,
27710149-27710305,27710400-27710516,27710596-27710722,
27710844-27711066,27711460-27711466,27711656-27711788
Length = 1574
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 139 DDVSTISPIGPDELPPPYQQVGMPMVSCRVCQALIDIRGK-KEQHVVKCSE 288
DD I P+ D +PP QQ+ P V D+RG+ +++ C +
Sbjct: 1040 DDRQRIMPMPEDRVPPRGQQLAYPEAVLLVDPINPDLRGEVDDKYQYSCED 1090
>02_02_0632 -
12413660-12413677,12413839-12413870,12414377-12414494,
12414794-12414860,12416098-12416237,12416378-12416470,
12416581-12416643,12418070-12418120,12419508-12419606,
12419876-12420012,12420121-12420219,12420346-12420523
Length = 364
Score = 26.6 bits (56), Expect = 6.9
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 234 LAHSAR-DHRHPYLLIWRRQLIGPNWGDCAHIITCDLFNSQQSLI 103
L H R DH H W R+L P W D IIT + NS S I
Sbjct: 76 LGHGGRGDHGHRSRQ-WSRKL--PGWQDFVGIITLLIMNSTISFI 117
>04_03_0496 + 16549333-16549465,16549620-16550020,16550412-16550880,
16552038-16552076,16553151-16553272,16553531-16553677,
16554097-16554186,16554274-16554398,16554567-16554772,
16554951-16555075,16555528-16555722,16556295-16556337,
16556762-16557267,16558198-16558570,16559772-16560062,
16560132-16561101,16561196-16561892,16562378-16562658,
16562731-16563400,16563860-16564034,16565103-16565659
Length = 2204
Score = 26.2 bits (55), Expect = 9.1
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +2
Query: 176 SCLRHINK*GCLWSLAECAKH*LTFVGKKSNM**NVQNAKKLRL*RMLRQARSMFGALAI 355
S ++H++ CL L K T++G K ++ N+ N LRL R++ F AL I
Sbjct: 860 SLVKHLHTLHCLGILLNSTKDAATYIGDKQSLYLNLVN--NLRLPRLIPLHIDTFLALRI 917
>03_06_0289 - 32870581-32871238,32871271-32871275
Length = 220
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +1
Query: 91 SQSENQALLRIEEVACDDVSTISPIGPDELPPPYQQVGMPMV 216
S E A L V CD I+P+ P PPP P V
Sbjct: 178 SGEECIAFLHRPPVHCDAHGCIAPLSPPPPPPPVHYAPPPPV 219
>02_01_0759 - 5628913-5630870,5631023-5631047
Length = 660
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 294 RSYAYKECSARQEVCSVPLQLPTNLQVIFAT 386
RS + +C +++CS P QLP + F T
Sbjct: 446 RSLSLVKCMGIKDICSTPAQLPLCKSLQFLT 476
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,482,257
Number of Sequences: 37544
Number of extensions: 275593
Number of successful extensions: 781
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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