Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0099
(387 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16709| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 1e-21
SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09) 30 0.76
SB_42814| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.4e-09) 30 0.76
SB_13956| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.0
SB_19705| Best HMM Match : zf-C2H2 (HMM E-Value=6e-07) 29 1.0
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_52091| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3
SB_4879| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3
SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20) 28 3.1
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_1697| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_56714| Best HMM Match : 7tm_3 (HMM E-Value=1.6e-18) 27 5.3
SB_11499| Best HMM Match : C1_1 (HMM E-Value=1.5) 27 5.3
SB_51719| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_13095| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
SB_12449| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
>SB_16709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 99.1 bits (236), Expect = 1e-21
Identities = 46/76 (60%), Positives = 53/76 (69%), Gaps = 5/76 (6%)
Frame = +1
Query: 175 ELPPPYQ-QVGM----PMVSCRVCQALIDIRGKKEQHVVKCSECKEATPIKNAPPGKKYV 339
E+PPPY G P V CRVCQ +I IRG++ Q VVKCS C+EATPIK P GKKY+
Sbjct: 131 EMPPPYSPSTGAMNAEPSVICRVCQQIIYIRGREHQRVVKCSNCQEATPIKPPPSGKKYI 190
Query: 340 RCPCNCLLICKSSSQR 387
RCPCN LL CK +S R
Sbjct: 191 RCPCNALLTCKVTSTR 206
>SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09)
Length = 1396
Score = 29.9 bits (64), Expect = 0.76
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Frame = +1
Query: 220 CRVCQALIDIRGKK--EQHV---VKCSECKEATP 306
C C +D++ +K E+HV KCS CKE P
Sbjct: 488 CETCGKRVDMKNRKEGEEHVCGEYKCSVCKEVVP 521
>SB_42814| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.4e-09)
Length = 924
Score = 29.9 bits (64), Expect = 0.76
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Frame = +1
Query: 220 CRVCQALIDIRGKK--EQHV---VKCSECKEATP 306
C C +D++ +K E+HV KCS CKE P
Sbjct: 102 CETCGKRVDMKNRKEGEEHVCGEYKCSVCKEVVP 135
>SB_13956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 29.5 bits (63), Expect = 1.0
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +1
Query: 220 CRVCQALIDIRGKKEQHVVKCSECKEAT----PIKNAPPGKKYVRCPCNCLLICK 372
C VC++ D+ + H V+CS+CK + + P CPC ++C+
Sbjct: 83 CEVCKSN-DVIFAFDPHAVQCSKCKAVLHKWYVVMSMPYVDGMSLCPCRMWMVCR 136
>SB_19705| Best HMM Match : zf-C2H2 (HMM E-Value=6e-07)
Length = 503
Score = 29.5 bits (63), Expect = 1.0
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 175 ELPPPYQQVGMPMVSCRVCQALIDIRGKKEQHVVKCSECKEATPIKNAPPGKKYV 339
+LPPP V CR CQ + E+H+ KC+ T + APP ++ +
Sbjct: 338 DLPPPQYSENADYVLCRYCQRRFN-PTVAERHIPKCAN----TTNRPAPPKQRAI 387
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 175 ELPPPYQQVGMPMVSCRVCQALIDIRGKKEQHVVKCSECKEATPIKNAPPGKKYV 339
+LPPP V CR CQ + E+H+ KC+ T + APP ++ +
Sbjct: 426 DLPPPQYSENPDYVLCRYCQRRFN-PTVAERHIPKCAN----TTNRPAPPKQRAI 475
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 29.1 bits (62), Expect = 1.3
Identities = 23/70 (32%), Positives = 30/70 (42%)
Frame = +1
Query: 169 PDELPPPYQQVGMPMVSCRVCQALIDIRGKKEQHVVKCSECKEATPIKNAPPGKKYVRCP 348
P P P+QQ P S C L K KC C + T + +AP + CP
Sbjct: 1858 PPPPPQPHQQQQQPTCSTS-CLTLCTPDCPK-----KC--CSKPTKVGSAPTSSQ---CP 1906
Query: 349 CNCLLICKSS 378
+CLL C+ S
Sbjct: 1907 SSCLLACQPS 1916
>SB_52091| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1775
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +1
Query: 220 CRVCQALIDIRGKKE-QHVV---KCSECKEATP 306
C C +D+ +KE HV KCS CKE P
Sbjct: 127 CETCGKRVDMMDRKEGDHVCGEYKCSVCKEVVP 159
>SB_4879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Frame = +1
Query: 220 CRVCQALIDIRGKK--EQHV---VKCSECKEATP 306
C C +D+ +K E+HV KCS CKE P
Sbjct: 168 CETCGKRVDMMDRKEGEEHVCEEYKCSVCKEVVP 201
>SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20)
Length = 2232
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Frame = +1
Query: 220 CRVCQALIDI---RGKKEQHVV---KCSECKEATP 306
C C+ LID+ R + ++HV KCS CKE P
Sbjct: 425 CGTCEKLIDMHLPRKEGKEHVCGEYKCSVCKEMVP 459
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 27.5 bits (58), Expect = 4.0
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +1
Query: 208 PMVSCRVCQALIDIRGKKEQHVVKCSECKEATPIK 312
P+ CR C+ +G +HV+ C + +E K
Sbjct: 893 PIAQCRFCEENFPTKGDLRKHVLTCDKKEEKVKSK 927
>SB_1697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 647
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Frame = +1
Query: 217 SCRVCQALIDI----RGKKEQHVV---KCSECKEATP 306
+C C +D+ R K E+HV KCS CKE P
Sbjct: 316 TCETCGKRVDMMNPNRKKGEEHVCGEYKCSVCKEVVP 352
>SB_56714| Best HMM Match : 7tm_3 (HMM E-Value=1.6e-18)
Length = 484
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 299 ASLHSEHFTTCCSFFPRMSISAWHTRQETI 210
++L S + C FFP++ + WH + TI
Sbjct: 389 STLLSSYGLLICIFFPKIYVIFWHPERNTI 418
>SB_11499| Best HMM Match : C1_1 (HMM E-Value=1.5)
Length = 572
Score = 27.1 bits (57), Expect = 5.3
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +1
Query: 220 CRVCQALIDIRGKKE-QHVV---KCSECKEATP 306
C C +D+ +KE HV KCS CKE P
Sbjct: 381 CERCGKRVDMMDRKEGDHVCGEYKCSVCKEVVP 413
>SB_51719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1296
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Frame = +1
Query: 220 CRVCQALIDIRGKK--EQHVV---KCSECKEATP 306
C C D+ +K E+HV KCS CKE P
Sbjct: 420 CETCGKRADMMDRKGGEEHVCGEYKCSVCKEVVP 453
>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4247
Score = 26.6 bits (56), Expect = 7.1
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Frame = -1
Query: 192 IWRRQLIGPN-----WGDCAHIITCDLFNSQQSLIFTLAVPHCGFLQK 64
+W L GP GD +TCDLF Q + HC L +
Sbjct: 3100 VWGSTLYGPPDDGSLTGDPLEQMTCDLFTGCQEAVLLRLALHCSSLDE 3147
>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 26.6 bits (56), Expect = 7.1
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = -3
Query: 286 LNISLHVALFSHECQSVLGTLGKRP*ASLLVDMAEATHRAQLGRLCSHHHM 134
LNI LH A SHE L T R S + A T+ +L R + H M
Sbjct: 860 LNIELHRAQTSHEMSHALHTYRHRAQTSHEMCHALYTYAYELHRAQTSHEM 910
>SB_13095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 26.2 bits (55), Expect = 9.3
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +1
Query: 202 GMPMVSCR--VCQALIDIRGKKEQHVVKCSECKEATPIKNAPPGKKYVRC 345
G SC + Q +IDI+ K ++ + S C +KN K + C
Sbjct: 241 GQVSASCSPTIVQQVIDIQNKAQEQSQQQSTCSLVEDLKNTMVSKNELEC 290
>SB_12449| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 661
Score = 26.2 bits (55), Expect = 9.3
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 201 RDAYGLLPSVPSTD*HSWEKRATCSEMFRMQRSYAYKECSARQE 332
R A L V S + + WE R ++F + +SY + E R++
Sbjct: 545 RKALKLFNIVKSYEWNEWELRRKALKLFNIVKSYEWNEWELRRK 588
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,086,250
Number of Sequences: 59808
Number of extensions: 314066
Number of successful extensions: 707
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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