Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0099
         (387 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   1.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   4.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   4.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   4.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.9  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   4.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   4.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   6.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   8.6  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = -2

Query: 317 AFFIGVA--SLHSEHFTTCCSFFPRMSISAWHTRQETIGIP--TC*YGGGNSSGPIGEIV 150
           +FF  V+  SL SE++T     F    ++ +  R         T  Y GG +    G + 
Sbjct: 98  SFFSSVSPTSLGSENYTGISDLFVFDDLNDYINRLNYSAFVNLTAYYDGGANLNLNGTVN 157

Query: 149 LTSSHATSSILS 114
            TSS A+S ++S
Sbjct: 158 CTSSIASSGVVS 169


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -3

Query: 124 QFSAKLDFHFGCPPLWLSTKILHNYAN 44
           Q  A L   FGC  +W  T I  +  N
Sbjct: 126 QIYAMLGSLFGCGSIWTMTMIAFDRYN 152


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 371 LQISRQLQGHRTYFL 327
           LQ+S  LQ H  YFL
Sbjct: 234 LQVSFNLQRHTGYFL 248


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 289 ILNISLHVALFSH 251
           ILN ++H+A +SH
Sbjct: 170 ILNCTIHIASWSH 182


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 301 TPIKNAPPGKKYVRCP 348
           +P+  +PP   + RCP
Sbjct: 466 SPVLRSPPAFSHSRCP 481


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 301 TPIKNAPPGKKYVRCP 348
           +P+  +PP   + RCP
Sbjct: 466 SPVLRSPPAFSHSRCP 481


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -3

Query: 124 QFSAKLDFHFGCPPLWLSTKILHNYAN 44
           Q  A L   FGC  +W  T I  +  N
Sbjct: 92  QIYAMLGSLFGCGSIWTMTMIAFDRYN 118


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -3

Query: 124 QFSAKLDFHFGCPPLWLSTKILHNYAN 44
           Q  A L   FGC  +W  T I  +  N
Sbjct: 2   QIYAMLGSLFGCGSIWTMTMIAFDRYN 28


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = -3

Query: 184 EATHRAQLGRLCSHHHMRPLQFSAKLD 104
           E   +  +   C  +H++ L +  KLD
Sbjct: 88  EIAEKLHVSHTCIENHLKQLGYVQKLD 114


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 248 MSISAWHTRQETIGIPTC*YGGGNSSGPIGEI 153
           + + +WHT Q    +P   Y G     P GE+
Sbjct: 134 VKVLSWHTDQGEEFVPGDDYDGKYLVLPSGEL 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,336
Number of Sequences: 438
Number of extensions: 2732
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)