Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0099
         (387 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03870.1 68418.m00360 glutaredoxin family protein contains Pf...    30   0.47 
At5g60520.1 68418.m07589 late embryogenesis abundant protein-rel...    28   1.9  
At5g58190.2 68418.m07284 expressed protein contains Pfam profile...    28   2.5  
At5g58190.1 68418.m07283 expressed protein contains Pfam profile...    28   2.5  
At4g18600.1 68417.m02755 expressed protein                             28   2.5  
At1g14220.1 68414.m01683 ribonuclease T2 family protein contains...    28   2.5  
At2g39000.3 68415.m04793 GCN5-related N-acetyltransferase (GNAT)...    27   3.3  
At2g39000.1 68415.m04794 GCN5-related N-acetyltransferase (GNAT)...    27   3.3  
At2g02990.1 68415.m00251 ribonuclease 1 (RNS1) identical to ribo...    27   3.3  
At3g56410.2 68416.m06274 expressed protein                             27   5.8  
At3g56410.1 68416.m06273 expressed protein                             27   5.8  
At3g18290.1 68416.m02326 zinc finger protein-related weak alignm...    27   5.8  
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c...    27   5.8  
At4g12220.1 68417.m01939 hypothetical protein                          26   7.6  
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa...    26   7.6  

>At5g03870.1 68418.m00360 glutaredoxin family protein contains Pfam
           profile PF00462: Glutaredoxin
          Length = 384

 Score = 30.3 bits (65), Expect = 0.47
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 202 GMPMVSCRVCQALIDIRGKKEQHVVKCSECKE 297
           GM  + C VC     +R ++++ +VKC +C E
Sbjct: 343 GMRFMMCVVCNGSCKVREEEKKSMVKCLKCNE 374


>At5g60520.1 68418.m07589 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 338

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +1

Query: 250 RGKKEQHVVKC-SECKEATPIKNAPPGKKYVRCPCNCLLICK 372
           RG   Q ++ C  EC E  P  N      ++ C   C + CK
Sbjct: 56  RGSCNQKILTCPKECPERKPKMNKKKKACFIDCSSKCEVTCK 97


>At5g58190.2 68418.m07284 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 528

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = -2

Query: 206 IPTC*YGGGNSSGPIGEIVLTS 141
           IP   YGGGN SG  G+I LTS
Sbjct: 169 IPYGQYGGGNYSGNQGDISLTS 190


>At5g58190.1 68418.m07283 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 527

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = -2

Query: 206 IPTC*YGGGNSSGPIGEIVLTS 141
           IP   YGGGN SG  G+I LTS
Sbjct: 168 IPYGQYGGGNYSGNQGDISLTS 189


>At4g18600.1 68417.m02755 expressed protein
          Length = 1907

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
 Frame = +1

Query: 88   DSQSENQALLRIEEVACDDVSTISPIGPDELPP----PYQQVGMP-MVSCRVC--QALID 246
            D ++++     + E   D+ S+ + +G    P     P  Q+ +   V    C  +A+ D
Sbjct: 893  DEEADDAMHPCLSEAVSDEQSSPNVLGSTNSPVAEAVPQAQISVEEFVGIDPCLVEAVPD 952

Query: 247  IRGKKEQHVVKCSECKEATPIKNAPPGKKYVRC 345
            +R   E+H+  C       PI+   P + +  C
Sbjct: 953  MRDLPEEHITSCIYLTNVVPIEEVLPEEPFEAC 985


>At1g14220.1 68414.m01683 ribonuclease T2 family protein contains
           similarity to S-like ribonuclease PD1 GI:9957752 from
           [Prunus dulcis]; contains ribonuclease T2 family
           histidine protein motif
          Length = 228

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +3

Query: 246 HSWEKRATCSEMFRMQRSYAYKECSARQE 332
           H WEK  TCSE    Q  Y       +Q+
Sbjct: 116 HEWEKHGTCSESVMDQHEYFENALKLKQK 144


>At2g39000.3 68415.m04793 GCN5-related N-acetyltransferase (GNAT)
           family protein contains Pfam profile PF00583:
           acetyltransferase, GNAT family
          Length = 235

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 195 LIWRRQLIGPNWGDCAHIITCDLFN 121
           LIW+ + +  NWG  A  + CDL N
Sbjct: 158 LIWKAEALAKNWGCRAIGLHCDLNN 182


>At2g39000.1 68415.m04794 GCN5-related N-acetyltransferase (GNAT)
           family protein contains Pfam profile PF00583:
           acetyltransferase, GNAT family
          Length = 291

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 195 LIWRRQLIGPNWGDCAHIITCDLFN 121
           LIW+ + +  NWG  A  + CDL N
Sbjct: 214 LIWKAEALAKNWGCRAIGLHCDLNN 238


>At2g02990.1 68415.m00251 ribonuclease 1 (RNS1) identical to
           ribonuclease SP:P42813 Ribonuclease 1 precursor (EC
           3.1.27.1) {Arabidopsis thaliana}, GI:561998 from
           [Arabidopsis thaliana]
          Length = 230

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 246 HSWEKRATCSEMFRMQRSYAYKECSARQE 332
           H WEK  TCSE    Q  Y     + +Q+
Sbjct: 118 HEWEKHGTCSESVIDQHEYFQTALNLKQK 146


>At3g56410.2 68416.m06274 expressed protein
          Length = 1535

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
 Frame = +1

Query: 202 GMPMVSCRVCQALIDI-----RGKKEQHVVKCSEC 291
           G P  +C  C  L+ +     +GK++++ V+C  C
Sbjct: 379 GAPFATCSYCLELLQLPQVSPQGKRQRYQVRCGSC 413


>At3g56410.1 68416.m06273 expressed protein
          Length = 1488

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
 Frame = +1

Query: 202 GMPMVSCRVCQALIDI-----RGKKEQHVVKCSEC 291
           G P  +C  C  L+ +     +GK++++ V+C  C
Sbjct: 332 GAPFATCSYCLELLQLPQVSPQGKRQRYQVRCGSC 366


>At3g18290.1 68416.m02326 zinc finger protein-related weak alignment
            to Pfam profiles: PF00097 Zinc finger, C3HC4 type (RING
            finger) (2 copies)
          Length = 1254

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
 Frame = +1

Query: 121  IEEVACDDVSTISPIGPDELPPPYQQVGMPMVSCRVCQALIDIRGKKEQHVVKCSECKEA 300
            + E+ C     + P+GP    P      M    C +C+   D R     H   C+ C+  
Sbjct: 1043 VTEMLCMRCLKVQPVGPICTTPSCDGFPMAKHYCSICKLFDDERA--VYHCPFCNLCRVG 1100

Query: 301  TPIKNAPPGKKYVRC-PCNCLL 363
              +     G  +  C  CNC L
Sbjct: 1101 EGL-----GIDFFHCMTCNCCL 1117


>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
           contains Pfam PF01422: NF-X1 type zinc finger; similar
           to transcriptional repressor NF-X1 (SP:Q12986) [Homo
           sapiens]; similar to EST gb|T21002
          Length = 1188

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 268 HVVKCSECKEATPIKNAPPGKKYVRCPCN 354
           H   C  CK   P ++ P GKK V   C+
Sbjct: 344 HPGPCPPCKAFAPPRSCPCGKKMVTTRCS 372


>At4g12220.1 68417.m01939 hypothetical protein
          Length = 163

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 148 SHHHMRPLQFSAKLDFHFGC 89
           SHHH+R L  S  + +HF C
Sbjct: 65  SHHHIRSLLRSRFVSYHFLC 84


>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
           family protein similar to arabinogalactan protein
           [Daucus carota] GI:11322245; contains Pfam profile
           PF01190: Pollen proteins Ole e I family
          Length = 359

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 22/75 (29%), Positives = 32/75 (42%)
 Frame = +1

Query: 151 TISPIGPDELPPPYQQVGMPMVSCRVCQALIDIRGKKEQHVVKCSECKEATPIKNAPPGK 330
           T +P+ P   PP    V  P+   +  ++L+ +RG      V C  CK A    N   G 
Sbjct: 200 TKAPVKPPVSPPTKPPVTPPVYPPKFNRSLVAVRG-----TVYCKSCKYAA--FNTLLGA 252

Query: 331 KYVRCPCNCLLICKS 375
           K +       L+CKS
Sbjct: 253 KPIE-GATVKLVCKS 266


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,722,871
Number of Sequences: 28952
Number of extensions: 209375
Number of successful extensions: 505
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)