Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0098
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       26   0.33 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    26   0.33 
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    24   1.0  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   3.1  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   3.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   3.1  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   3.1  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    23   3.1  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    22   4.1  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    22   4.1  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   7.1  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   7.1  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -3

Query: 572 HRCHCQPYEILFYKHNRLR--RVRPRDTTVTCI 480
           HRC CQP     Y H  +   +V P +   TC+
Sbjct: 52  HRCQCQPGFTGKYCHENINDCKVNPCENGGTCV 84


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 25/106 (23%), Positives = 39/106 (36%)
 Frame = +1

Query: 91  CRPQKCIEKNDIIFCQLVDEEKCEYGCACKIGYLRDENGTCIPQDKCPTVPCPVNEYFTN 270
           C    C     +   QLV++    Y C CK+G++     + +  + C T PC      T 
Sbjct: 302 CLSNPCSNAGTLDCVQLVND----YHCNCKLGFMGRHCESKV--NFCATSPCQNGGVCTT 355

Query: 271 CAKGMCRQENCTELGKLSECKTQSTELCEPGCVCEGGFLRSKNGTG 408
              G   +  C E      C+    + C+      GG  R  +G G
Sbjct: 356 IHAG--HKCTCPEGFYGKNCEFSGYD-CDSNPCQNGGVCRISDGGG 398



 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 611 LLNKAGIHNLFHRHRCHC 558
           L N     ++ + HRCHC
Sbjct: 155 LCNNGTCEDIGNSHRCHC 172


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +2

Query: 374 KGAS*DQKTERELCPVNEVYSSCRQPNCNSDKCEYKYRSQSCPSDEPCEVGC 529
           KG S ++  + E   VNE  ++      + D C+Y Y       D P   GC
Sbjct: 160 KGCSSEEVFQFECPKVNETVAATHPRYADPDDCQYFY--VCINGDTPRRSGC 209


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 675 PPRSEHFSTRQTAWMQLKYCSFTEQSWDSQSLSS 574
           PP  + F        QL+Y     Q+++S  LS+
Sbjct: 44  PPGGDFFGNHHIQQQQLQYGYHNHQNYNSNVLSN 77


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 675 PPRSEHFSTRQTAWMQLKYCSFTEQSWDSQSLSS 574
           PP  + F        QL+Y     Q+++S  LS+
Sbjct: 44  PPGGDFFGNHHIQQQQLQYGYHNHQNYNSNVLSN 77


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 221 CGIQVPFSSLRYPILQAHPYSHFSSSTN 138
           CG+ VP   ++  I+   P     S+TN
Sbjct: 403 CGVNVPVPPMQSQIINPQPQITSPSNTN 430


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 675 PPRSEHFSTRQTAWMQLKYCSFTEQSWDSQSLSS 574
           PP  + F        QL+Y     Q+++S  LS+
Sbjct: 44  PPGGDFFGNHHIQQQQLQYGYHNHQNYNSNVLSN 77


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 675 PPRSEHFSTRQTAWMQLKYCSFTEQSWDSQSLSS 574
           PP  + F        QL+Y     Q+++S  LS+
Sbjct: 44  PPGGDFFGNHHIQQQQLQYGYHNHQNYNSNVLSN 77


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = -2

Query: 645 QTAWMQLKYCSFTEQSWDSQSLSSTQVPLSALRNPLLQTQPTSQGSSEGHDCDLYLYSHL 466
           +T W      S +E   D ++L       ++L N      P S   +EGH   + +YS L
Sbjct: 5   ETLWKMKDPMSASETVQDHRNLLDWSK--TSLDNATEHKLPISMRFNEGHQLSIIVYSIL 62


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = -2

Query: 645 QTAWMQLKYCSFTEQSWDSQSLSSTQVPLSALRNPLLQTQPTSQGSSEGHDCDLYLYSHL 466
           +T W      S +E   D ++L       ++L N      P S   +EGH   + +YS L
Sbjct: 5   ETLWKMKDPMSASETVQDHRNLLDWSK--TSLDNATEHKLPISMRFNEGHQLSIIVYSIL 62


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -3

Query: 638 LGCNLNTVHLLNKAGIHNLFHRHR 567
           L C L    LL  +G   LF  HR
Sbjct: 232 LSCYLERTELLRSSGETRLFLTHR 255


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 164 YSHFSSSTNWQKMISFFSMHF*GLHKP*RQVRSSFSG 54
           + +F++    Q ++ F   HF G  K   Q+ S+F+G
Sbjct: 71  FFNFATKKLEQFIVRFMKYHFFGTLKLWSQLFSTFAG 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,797
Number of Sequences: 336
Number of extensions: 4460
Number of successful extensions: 20
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)