Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0098
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116... 32 0.37
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 32 0.37
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 31 0.85
06_01_0125 + 970746-970967,971126-971226,971897-972026,972108-97... 30 1.5
06_03_1004 - 26832638-26833183,26833373-26833569,26833636-268338... 30 2.0
04_03_0631 - 18190195-18190686,18190866-18191066 30 2.0
07_01_0453 + 3420727-3420800,3421666-3421792,3422348-3422431,342... 29 4.5
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 28 6.0
04_01_0609 + 7966263-7966366,7967945-7968706,7972607-7972851,797... 28 7.9
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 28 7.9
01_01_0078 + 587975-588179,588506-588606,589087-589167,589240-59... 28 7.9
>12_01_0151 -
1158834-1159703,1159917-1160092,1160144-1162097,
1162360-1162620,1162729-1162916,1164127-1164166
Length = 1162
Score = 32.3 bits (70), Expect = 0.37
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 632 CNLNTVHLLNKAGIHNLFHRHRCH 561
CNL +++L GIHNLF CH
Sbjct: 610 CNLQSINLAQIEGIHNLFSSFACH 633
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 32.3 bits (70), Expect = 0.37
Identities = 20/73 (27%), Positives = 25/73 (34%)
Frame = +1
Query: 148 EEKCEYGCACKIGYLRDENGTCIPQDKCPTVPCPVNEYFTNCAKGMCRQENCTELGKLSE 327
++ C CAC ENGTC + + C +CAK CR C E
Sbjct: 457 QQMCGKDCACV------ENGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAASRE 510
Query: 328 CKTQSTELCEPGC 366
C C C
Sbjct: 511 CDPDVCRNCWVSC 523
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 512 PCEVGCVCKRGFRRADNGTCVDERDCESQLCSVNEQYLSCIQAVCRVEKC 661
PC +C + +NGTC ++ S+ C + C ++ CR +C
Sbjct: 453 PCGCQQMCGKDCACVENGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQC 502
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 31.1 bits (67), Expect = 0.85
Identities = 21/71 (29%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Frame = +1
Query: 157 CEYGCACKIGYLRDENGTCIPQD-KCPTVPCPVNEYFTNCAKGMCRQENCTELGKLSECK 333
C+ C + L NGTC + CP + C +CAK CR C EC
Sbjct: 653 CQSACGKQCPCLT--NGTCCEKYCGCPKM-CKNRFRGCHCAKSQCRSRQCPCFAADRECD 709
Query: 334 TQSTELCEPGC 366
C GC
Sbjct: 710 PDVCRNCWVGC 720
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/59 (23%), Positives = 24/59 (40%)
Frame = +2
Query: 485 RSQSCPSDEPCEVGCVCKRGFRRADNGTCVDERDCESQLCSVNEQYLSCIQAVCRVEKC 661
+ Q C PC C + NGTC ++ ++C + C ++ CR +C
Sbjct: 641 KDQPCRQYTPCGCQSACGKQCPCLTNGTCCEKYCGCPKMCKNRFRGCHCAKSQCRSRQC 699
>06_01_0125 +
970746-970967,971126-971226,971897-972026,972108-972333,
972400-972502,972519-972594,972710-973333
Length = 493
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = -3
Query: 470 IYQNYNWAVDSSSTLRSRDIVPVPFFDLKK------PPSQTQPGSHSSVDCVLHSDNLPS 309
I+ WA S+ L S D+ P P F++ PP QP S+D + S++ PS
Sbjct: 127 IFGTNQWAFGFSAALHSFDVPPNPQFNMHGSSQMSCPPINEQPSQGFSIDNNIGSEDPPS 186
>06_03_1004 -
26832638-26833183,26833373-26833569,26833636-26833861,
26833943-26834072,26835884-26836188
Length = 467
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = -3
Query: 470 IYQNYNWAVDSSSTLRSRDIVPVPFFDLKK------PPSQTQPGSHSSVDCVLHSDNLPS 309
I+ WA S+ L S D+ P P F++ PP QP S+D + S++ PS
Sbjct: 121 IFGTDQWAFGFSAALHSFDVPPNPQFNMHGSSQMSCPPINEQPSQGLSIDNNIGSEDPPS 180
>04_03_0631 - 18190195-18190686,18190866-18191066
Length = 230
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 557 DNGTCVDERDCESQLCSVNE-QYLSC-IQAVCRVEKCSDLGGSL 682
DNG CVD++ C+ +L ++ Y C + C LG SL
Sbjct: 59 DNGKCVDQKGCDFKLLGYSDSDYAGCKVDRKSTTGTCQFLGRSL 102
>07_01_0453 +
3420727-3420800,3421666-3421792,3422348-3422431,
3422550-3422644,3423063-3423154,3423326-3423379,
3424221-3424273,3424472-3424539,3424777-3424852,
3425159-3425242,3425793-3425941,3426375-3426492,
3426583-3426699,3426950-3427170,3427503-3427536,
3427585-3427685,3427832-3427943,3428379-3428504,
3428579-3428716,3428808-3428858,3428938-3429050,
3430253-3430318,3430582-3430729,3430826-3430930,
3431017-3431118,3431495-3431567,3431647-3431813,
3431906-3432028
Length = 956
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 227 LSCGIQVPFSSLRYPILQAHPYSHFSSST 141
LSC PFS+L +P L + + HF +T
Sbjct: 483 LSCSALWPFSTLGWPDLSSEDFKHFYPAT 511
>01_05_0279 +
20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 500 PSDEPCEVGCVCKRGFRRADNGTCVDE 580
P D C CK F ADN TC +E
Sbjct: 854 PLDAHCSWQLFCKEAFWNADNKTCPEE 880
>04_01_0609 +
7966263-7966366,7967945-7968706,7972607-7972851,
7976940-7977107,7977471-7977734,7977962-7978509
Length = 696
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 226 KCPTVPCPVNEYFTNCAKGMCRQENCTELGK-LSECKTQSTELCEPGCVCE 375
KC V ++ YF NC++G + K ++EC+ S +C G C+
Sbjct: 340 KCANVTSGLDGYFCNCSEGYIGNPYIPDGCKDVNECENNS--ICGAGSTCK 388
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 395 KTERELCPVNEVYSSCRQPNCNSDKCEYKYRSQSCPSDEPCEVGCVCKRGF 547
K +R+ C N+ SC++ +C KC K + S C C C+ F
Sbjct: 447 KRKRQKCQ-NDNVDSCKRCSCKKSKC-LKLYCECFASKVYCSESCSCRGCF 495
>01_01_0078 +
587975-588179,588506-588606,589087-589167,589240-590178,
590388-590542,590837-590902,590963-591023,591659-591853,
591939-592049,592116-592280
Length = 692
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -2
Query: 585 SLSSTQVPLSALRNPLLQTQPTSQGSSEG 499
+LSS LS L+ PLLQ T+QG S G
Sbjct: 239 TLSSGPQKLSELQPPLLQPPGTTQGPSSG 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,391,908
Number of Sequences: 37544
Number of extensions: 468164
Number of successful extensions: 1454
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1453
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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