Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0096
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   2.0  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    26   3.4  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    25   6.0  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   6.0  

>SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 100

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 143 LPHSCF*SHIRRSFTLSIVIIYHSYVIDNFLIRF 244
           LPH+ F +HI   F +S + +  SY    +++ F
Sbjct: 2   LPHTAFSNHIHYHFIISFMKMNDSYTPYTYIVSF 35


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 268 LKTAISYTQLLFA*KKMPSIAGKYQHYKNEDIDDY 372
           ++ A SY   L A +K+  I GKYQ  + ++ D+Y
Sbjct: 10  MEYASSYETWLEAAEKLDVIEGKYQWREQKESDEY 44


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 456 DTMTIKNSSLLRTVEHKFKLGEEYEEKMPNSIIKSVTTI 572
           DT   K    L  +EH  +  E+Y EK  N++   +T I
Sbjct: 115 DTFPAKAQKALTFLEHHLRDLEDYAEKSKNNVETLMTDI 153


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 242 ILSKNYQSRMNDK*LQLIK*RTYEYVIKSMNVV 144
           +L+KNYQ R+ D  +  I   T+ Y +KS++ +
Sbjct: 516 LLTKNYQERLMDSRIDAISKFTHSY-LKSLSEI 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,103,353
Number of Sequences: 5004
Number of extensions: 37880
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)