Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0096
         (576 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80870.1 68414.m09489 protein kinase family protein contains ...    31   0.42 
At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative (CH...    27   9.0  
At1g45160.1 68414.m05177 protein kinase family protein contains ...    27   9.0  

>At1g80870.1 68414.m09489 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 692

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +3

Query: 408 KMMSMSSPLMEISIDGDTM--TIKNSSLLRTVEHKFKLGEEYEEKMPNSII 554
           K MS++S  M +++DG+T    + N  +L   +H+F  G+E     PNS++
Sbjct: 289 KEMSLNS--MSLAMDGETKGKEVSNDVVLSCEDHEFDQGKEMNLLSPNSVL 337


>At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative
           (CHX20) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 842

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 444 SIDGDTMTIKNSSLLRTVEHKFKLGEEYEEKMPNSIIKSVTTI 572
           ++D +     +   L   + K+K   EY+EK PN+II+ + +I
Sbjct: 715 NVDPEKEKELDEGALEDFKSKWKEMVEYKEKEPNNIIEEILSI 757


>At1g45160.1 68414.m05177 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 1067

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 489 RTVEHKFKLGEEYEEKMPN 545
           + VE +F L +EYE+KM N
Sbjct: 370 KVVEQRFYLSDEYEDKMSN 388


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,236,648
Number of Sequences: 28952
Number of extensions: 171212
Number of successful extensions: 265
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)