Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0094
(764 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 194 7e-50
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.) 124 6e-29
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0) 65 5e-11
SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 7e-11
SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017) 60 1e-09
SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37) 57 1e-08
SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18) 57 2e-08
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0) 54 1e-07
SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07) 54 2e-07
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05) 53 2e-07
SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15) 50 2e-06
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06) 46 4e-05
SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30) 42 5e-04
SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39) 38 0.012
SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_40772| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05) 33 0.25
SB_36444| Best HMM Match : UQ_con (HMM E-Value=2.8) 33 0.25
SB_25516| Best HMM Match : AAA_2 (HMM E-Value=0) 33 0.25
SB_21011| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.00022) 31 0.77
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35) 30 2.3
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 29 3.1
SB_20773| Best HMM Match : DNA_pol_B_exo (HMM E-Value=2.5e-37) 29 5.4
SB_30778| Best HMM Match : fn3 (HMM E-Value=1.99965e-42) 28 9.5
SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_1534| Best HMM Match : zf-FPG_IleRS (HMM E-Value=6.2) 28 9.5
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 194 bits (473), Expect = 7e-50
Identities = 83/108 (76%), Positives = 92/108 (85%)
Frame = +2
Query: 392 SSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPP 571
SSA+RAL LE K L EEPVEGF V++ E N FEW+VAIFGPP TLY GGYFKAHM FP
Sbjct: 1123 SSAVRALQLELKKLTEEPVEGFTVEVPDESNTFEWDVAIFGPPGTLYAGGYFKAHMSFPH 1182
Query: 572 DYPYSPPSIRFLTNVWHPNVYENGDLCISILHPPVDDPQSGELPCERW 715
DYPYSPP+ RFLT +WHPN+YE+GD+CISILHPPVDDPQSGELP ERW
Sbjct: 1183 DYPYSPPTFRFLTKMWHPNIYESGDVCISILHPPVDDPQSGELPSERW 1230
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/16 (81%), Positives = 16/16 (100%)
Frame = +1
Query: 715 DPTQSVRTVLLSVISL 762
+PTQ+VRT+LLSVISL
Sbjct: 1231 NPTQNVRTILLSVISL 1246
>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 124 bits (300), Expect = 6e-29
Identities = 48/95 (50%), Positives = 70/95 (73%)
Frame = +2
Query: 431 LQEEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLT 610
LQ++PVEGF L +++L++WE+ + GPP T Y+ GYFKA M FP +YP PP++ F++
Sbjct: 344 LQKKPVEGFSAGLFDDEDLYKWEIMVVGPPGTYYEEGYFKASMVFPKEYPQRPPTLTFIS 403
Query: 611 NVWHPNVYENGDLCISILHPPVDDPQSGELPCERW 715
++WHPNV++NG++CISILH P +D E ERW
Sbjct: 404 DIWHPNVHKNGEVCISILHEPGEDKYGYEKADERW 438
>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 145
Score = 65.3 bits (152), Expect = 5e-11
Identities = 29/84 (34%), Positives = 45/84 (53%)
Frame = +2
Query: 419 EYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPPDYPYSPPSI 598
E L++ + FR + E N+ W+ I P Y G F+ + FP +YP+ PP I
Sbjct: 1 ELDELRKSGTKTFRDVKVDESNILYWQGLIV-PEMPPYNKGAFRIEICFPAEYPFKPPKI 59
Query: 599 RFLTNVWHPNVYENGDLCISILHP 670
F T ++HPN+ E G +C+ I+ P
Sbjct: 60 TFKTKIYHPNIDEKGQVCLPIISP 83
>SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 64.9 bits (151), Expect = 7e-11
Identities = 37/98 (37%), Positives = 50/98 (51%)
Frame = +2
Query: 392 SSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPP 571
S A++ L E K L+ E + + L EDNLFEW + GPPDT + GG + + PP
Sbjct: 9 SPAVKRLMREAKELRNA-TELYHAQPL-EDNLFEWHFTVRGPPDTEFAGGRYHGRIILPP 66
Query: 572 DYPYSPPSIRFLTNVWHPNVYENGDLCISILHPPVDDP 685
+YP PPSI LT + + L +S HP P
Sbjct: 67 EYPMKPPSIMLLTPNGRFEIGKKICLSMSAHHPETWQP 104
>SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017)
Length = 123
Score = 60.5 bits (140), Expect = 1e-09
Identities = 25/47 (53%), Positives = 30/47 (63%)
Frame = +2
Query: 479 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLTNVW 619
DNLFEW + GPPDT + GG + + PP+YP PPSI LT VW
Sbjct: 1 DNLFEWHFTVRGPPDTEFAGGRYHGRIILPPEYPMKPPSIMLLT-VW 46
>SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 59.3 bits (137), Expect = 3e-09
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 5/68 (7%)
Frame = +2
Query: 476 EDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLTN-----VWHPNVYEN 640
+D++ + I GP DT Y+GG+F ++ PPDYP PP ++ +T ++PN+Y N
Sbjct: 7 KDDIPKIHALITGPFDTPYEGGFFYFLIRCPPDYPIRPPRVKLMTTGSGQVRFNPNLYRN 66
Query: 641 GDLCISIL 664
G +C+SI+
Sbjct: 67 GKVCLSII 74
>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
Length = 190
Score = 57.2 bits (132), Expect = 1e-08
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = +2
Query: 506 IFGPPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLTNVWHPNVYENGDLCISILHPP 673
+ G T Y G FK ++ P YP+ PP +RF+T ++HPN+ +G +C+ L P
Sbjct: 2 LIGAEGTPYHKGIFKLDIQIPERYPFEPPKVRFVTPIYHPNIDSSGRICLDTLKMP 57
>SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18)
Length = 215
Score = 56.8 bits (131), Expect = 2e-08
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +2
Query: 476 EDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLTNVWHPNV-YENGDLC 652
EDN+ E+E+ I P D Y+GG FK +K DYP +PP R + N++HPN+ ++G +C
Sbjct: 33 EDNMEEFELQIT-PTDGAYRGGQFKFSVK-TEDYPNTPPVPRCVNNIYHPNMDLDDGSVC 90
Query: 653 ISIL 664
+S+L
Sbjct: 91 LSLL 94
>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 226
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Frame = +2
Query: 392 SSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPP 571
S+A + + E + +P G+D L+EW I GPP ++Y+GG F + FP
Sbjct: 94 STAAKRIQRELTEITLDPPPNCSAGPKGDD-LYEWYSTILGPPGSVYEGGVFFLDIHFPS 152
Query: 572 DYPYSPPS----IRFLTNVWHP 625
DYP+ PP + L + W P
Sbjct: 153 DYPFKPPKGMVCLDILKDSWSP 174
>SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07)
Length = 181
Score = 53.6 bits (123), Expect = 2e-07
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +2
Query: 479 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPPDYPYSPPSI 598
D L+EW I GPP ++Y+GG F + FP DYP+ PP +
Sbjct: 49 DKLYEWYSTILGPPGSVYEGGVFFLDIHFPTDYPFKPPKV 88
>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
Length = 200
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/67 (35%), Positives = 36/67 (53%)
Frame = +2
Query: 392 SSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPP 571
S+A + + E + +P G+D L+EW I GPP ++Y+GG F + FP
Sbjct: 134 STAAKRIQRELTEITLDPPPNCSAGPKGDD-LYEWYSTILGPPGSVYEGGVFFLDIHFPS 192
Query: 572 DYPYSPP 592
DYP+ PP
Sbjct: 193 DYPFKPP 199
>SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15)
Length = 243
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/63 (41%), Positives = 38/63 (60%)
Frame = +2
Query: 476 EDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLTNVWHPNVYENGDLCI 655
EDN+ E+E+ I P D Y+GG FK ++ DYP PSI T ++HPN+ +C+
Sbjct: 33 EDNMEEFELQIT-PTDGAYRGGQFKFSVR-TTDYPNVAPSINCKTKIYHPNMDGYDGVCM 90
Query: 656 SIL 664
S+L
Sbjct: 91 SLL 93
>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
Length = 739
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Frame = +2
Query: 425 KSLQEEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPPDYPYSPPSIRF 604
+ ++ V R+ + + ++F V I GP T Y G F + P +YP +PPS +
Sbjct: 615 RGYEDRMVTTVRLTVRPDHDIFR--VMIEGPAGTPYDHGLFAFDILLPANYPDAPPSFHY 672
Query: 605 LT---NVWHPNVYENGDLCIS 658
L+ +PN+YE+G +CI+
Sbjct: 673 LSMCNGRLNPNLYEDGKVCIT 693
>SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)
Length = 204
Score = 41.9 bits (94), Expect = 5e-04
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 560 KFPPDYPYSPPSIRFLTNVWHPNVYENGDLCISILHPP 673
K P+ PP +RF+T ++HPN+ +G +C+ L P
Sbjct: 34 KLEASTPFEPPKVRFVTPIYHPNIDSSGRICLDTLKMP 71
>SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/50 (42%), Positives = 27/50 (54%)
Frame = +2
Query: 461 VKLLGEDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLT 610
V +LG L E+ V FGP T Y+GG +K + P YP+ PSI T
Sbjct: 41 VTILG--GLNEFIVKFFGPVGTPYEGGVWKVRVDLPEKYPFKSPSIANFT 88
>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 38.3 bits (85), Expect = 0.007
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Frame = +2
Query: 404 RALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAI--FGPPDTLYQ------GGYFKAHM 559
+ L E++ + + F +L+ +DNLFEW V + LY+ + ++
Sbjct: 737 KRLMKEFQDVSRKTERIFSAELV-DDNLFEWNVKLHTIDGDSLLYRDMVETGSKFILLNI 795
Query: 560 KFPPDYPYSPPSIRFLT-NVWHPNVYENGDLCISILHP 670
FP ++P++PP +R L + V + G +C+ +L P
Sbjct: 796 TFPENFPFAPPFMRVLAPRIEGGFVLDGGAICMELLTP 833
>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
Length = 841
Score = 37.5 bits (83), Expect = 0.012
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = +2
Query: 452 GFRVKLLGEDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLTNVWHPNV 631
G +V+L+ E + + I GPP+T ++GG + + P YP++PP N
Sbjct: 676 GIKVELVDE-TFTKLKGEIRGPPETPFEGGTYNLDIVIPETYPFNPPK-------GCCND 727
Query: 632 YENGDLCISILHPPV-----DDPQSGELPCERWTL 721
ENGD ++ P V + P GE W L
Sbjct: 728 LENGDAVYTVGKPVVPAALMNRPTRGERRFAYWAL 762
>SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 34.3 bits (75), Expect = 0.11
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = +2
Query: 602 FLTNVWHPNVYENGDLCISIL 664
FLT ++HPNV +NG++C++ L
Sbjct: 147 FLTKIFHPNVAKNGEICVNTL 167
>SB_40772| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 33.5 bits (73), Expect = 0.19
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 575 YPYSPPSIRFLTNVWHPNVYENG 643
+P S P ++F +NV+HP ++ENG
Sbjct: 118 FPDSRPLVKFTSNVFHPQIHENG 140
>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
Length = 1604
Score = 33.1 bits (72), Expect = 0.25
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -1
Query: 563 ISCVP*SIHLDKVYPAVRRLPLPTQIDCPLLAI*H 459
++C+P + L++ PAV RLP P ++ P+ A+ H
Sbjct: 471 VTCLPTHLPLERPVPAVTRLPTPLPLERPVPAVTH 505
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -1
Query: 563 ISCVP*SIHLDKVYPAVRRLPLPTQIDCPLLAI*H 459
++ +P + L++ PAV RLP P ++ P+ A+ H
Sbjct: 503 VTHLPTDLPLERPVPAVTRLPTPLLLERPVPAVTH 537
>SB_36444| Best HMM Match : UQ_con (HMM E-Value=2.8)
Length = 55
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 506 IFGPPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLT 610
+ GP DT Y G F + FP YP PP ++ +T
Sbjct: 12 VTGPVDTPYSRGCFVFDIFFPGTYPNVPPLVKLIT 46
>SB_25516| Best HMM Match : AAA_2 (HMM E-Value=0)
Length = 609
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 516 RRIHFIKVD-TSRHT*NSPLTTRIHHHPLG 602
R+IH I VD T RH SPL+ ++ HHP G
Sbjct: 39 RQIHAIAVDGTRRHANASPLSCQLLHHPTG 68
>SB_21011| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.00022)
Length = 353
Score = 31.5 bits (68), Expect = 0.77
Identities = 21/79 (26%), Positives = 34/79 (43%)
Frame = +2
Query: 452 GFRVKLLGEDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLTNVWHPNV 631
G RV ++G+ +F +F + LY F+ + + Y+ FL NV+H
Sbjct: 61 GARVSIIGQ--IFNQHPGVFYMNEPLYPFEMFRT-LNYTKRGEYNGQVRAFLDNVFHCRF 117
Query: 632 YENGDLCISILHPPVDDPQ 688
Y D HP + DP+
Sbjct: 118 YGYDDYLTFFSHPGLTDPR 136
>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
Length = 2748
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = +2
Query: 338 GSEG*INT*LTMSNTVPTSSALRALALEYKSL-QEEPVEGFRVKLLGED---NLFEWEVA 505
G++ INT + N SS RA + + Q V G + + N + + +
Sbjct: 884 GNDASINTPASQENASAFSSQQRASSSSQATTKQNTTVTGANMYTIPTPFVYNHYPYSSS 943
Query: 506 IFGPPDTLYQG 538
IFGPP LYQG
Sbjct: 944 IFGPPQALYQG 954
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -3
Query: 141 KSRRNNRPKAHDQLNNNEKAKHRSTKRNPKKISYVRATAAPR 16
KSR +R ++ + ++++ RS R+PKK R + +P+
Sbjct: 211 KSRSRSRSRSRSHRKSRKRSESRSRSRSPKKSRSARRSRSPQ 252
>SB_20773| Best HMM Match : DNA_pol_B_exo (HMM E-Value=2.5e-37)
Length = 1652
Score = 28.7 bits (61), Expect = 5.4
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = -3
Query: 432 RLLYSNAKALRAELVGTVLDIVSYVFIQPSLPI*TKLYKHITLE-LFMLSTYPPGISTRH 256
R+LY N++ R E GT+ VS + I LY++ E LF + PP ++T
Sbjct: 1288 RILYINSRTPREE-EGTMWRKVSRTLPRSHAAI--HLYEYSVKETLFTEHSRPPQLATGV 1344
Query: 255 NNNELEILVNIASILQHP 202
N L L++ ++++HP
Sbjct: 1345 LNFSLPDLLHAPTLVEHP 1362
>SB_30778| Best HMM Match : fn3 (HMM E-Value=1.99965e-42)
Length = 823
Score = 27.9 bits (59), Expect = 9.5
Identities = 23/83 (27%), Positives = 43/83 (51%)
Frame = -3
Query: 507 IATSHSNRLSSPSNLTRKPSTGSSCRLLYSNAKALRAELVGTVLDIVSYVFIQPSLPI*T 328
+ TS ++ + P N+T ++ +S R+L+SN A G + + V + + + +LP
Sbjct: 207 VNTSQTSPSAPPVNITAFNTSATSIRVLWSNVP--EAHRNGIIQNFV-FSYGETALP--W 261
Query: 327 KLYKHITLELFMLSTYPPGISTR 259
+ +ITL L L+T G T+
Sbjct: 262 SNHSNITLTLDSLATTAEGYFTK 284
>SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1390
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 509 FGPPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLTNVWHPNVYENGDLCISILHPP 673
F PP YQ G FPP PP+++F V+HP + + D C+ + P
Sbjct: 1049 FPPPPPPYQTG--SPIRAFPP-----PPAVKFGGQVYHPAMLHDYD-CVRVRRYP 1095
>SB_1534| Best HMM Match : zf-FPG_IleRS (HMM E-Value=6.2)
Length = 76
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 497 PTQIDCPLLAI*HGNLLQVLLADSCTPTLKP 405
P +D LAI H L + D C PT +P
Sbjct: 3 PCDLDAAALAIRHALLTAATMCDRCWPTWRP 33
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,862,471
Number of Sequences: 59808
Number of extensions: 589758
Number of successful extensions: 1503
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1497
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -