Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0094
         (764 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    24   4.5  
AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein p...    23   7.8  

>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -3

Query: 276  PGISTRHNNNELEILVN--IASILQHPQVRVTHFKRQPLNLC**FTLKSRRNNRPKAHDQ 103
            P IS+ H  NELE+  +  +A  L    ++  +     +     FT+     N+ K + Q
Sbjct: 1095 PCISSEHGENELELTPDDILADGLLKKGIKEHNQLEVAIGDGMEFTIHGDLKNKAKKNKQ 1154

Query: 102  LNNNEK 85
            + NN K
Sbjct: 1155 IMNNSK 1160


>AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein
           protein.
          Length = 353

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = -3

Query: 225 IASILQHPQVRVTHFKRQPLNLC**FTLKSRRNNRPKAHDQLNNNEKAKHRSTKRNPKK 49
           +A +LQ  Q +    +RQP       T + ++  + + H Q +N  +A+ R   RN ++
Sbjct: 68  VAGMLQQQQQQ----QRQPQRQAVVGTQQQQQRRQQQQHQQRSNATQAQRREQLRNEQR 122


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 874,569
Number of Sequences: 2352
Number of extensions: 19782
Number of successful extensions: 35
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79418373
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)