Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0090
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068713-2|AAC17805.1|  347|Caenorhabditis elegans Seven tm rece...    33   0.27 
AC006780-3|AAF60649.2|  425|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    28   7.8  
AF026209-11|AAB71282.1|  353|Caenorhabditis elegans Seven tm rec...    28   7.8  

>AF068713-2|AAC17805.1|  347|Caenorhabditis elegans Seven tm
           receptor protein 260 protein.
          Length = 347

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
 Frame = +1

Query: 166 FEWVSKRDAPAALFFNYQKKMESKYFMQTLNLTVKI--YRGVKGYHSLN--FEKNITTKN 333
           F W    +     +FN++    +   M  ++L++ I  Y GVKGY S+N    ++ +++ 
Sbjct: 183 FFWPKYNNFTTDQYFNWRTAGGAMIVMGLISLSIAIMVYFGVKGYRSMNKLIAQSNSSQK 242

Query: 334 FQLFERCKLN*SSIKNIELLILRR*PSYKI-----FDGCLNLA*DIFKISLSIY 480
           F+  ++   N   ++    ++L   P+  I     FD C      IF +++++Y
Sbjct: 243 FRSVQKQLFNALVLQTFIPVLLMHIPASAIYFTIFFDKCTEYLGKIFTLTVAMY 296


>AC006780-3|AAF60649.2|  425|Caenorhabditis elegans Hypothetical
           protein Y47D9A.5 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 543 GISIGCYCSVDRRSACCGS*LVYTQTY-LENVLS 445
           GISI CYC+    +AC  S ++    Y L+N ++
Sbjct: 87  GISINCYCAKSFFAACLSSTIIAESIYQLKNTIN 120


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
           protein C08G9.2 protein.
          Length = 2224

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 595 PFTPQYVPFVCKYNNIKKS*QYCVSLCIVCDCLSVSLGSTET 720
           PF P     +C +  +K   Q C+  C +  C +   G +E+
Sbjct: 29  PFRPTSCNLLCPFGYLKDILQQCICTCAMDPCQTTICGPSES 70


>AF026209-11|AAB71282.1|  353|Caenorhabditis elegans Seven tm
           receptor protein 262 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
 Frame = +1

Query: 166 FEWVSKRDAPAALFFNYQKKMESKYFMQTLNLT--VKIYRGVKGYHSLNFEKNIT--TKN 333
           F W    ++    +F+++    S   M ++ L+  + I+ G+KGY S+N    IT  ++ 
Sbjct: 184 FFWPKLENSITETYFSWKGAEGSLIVMGSIGLSSSIMIFFGIKGYISMNNLLAITSNSEQ 243

Query: 334 FQLFERCKLN*SSIKNIELLILRR*PSYKIF 426
           FQ  ++       I+ I  ++L   P+  I+
Sbjct: 244 FQNIQKQLFQALCIQTIIPVVLMHIPASAIY 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,130,074
Number of Sequences: 27780
Number of extensions: 304728
Number of successful extensions: 613
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)