Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0089
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1182 + 11207282-11207330,11208015-11208094,11208181-112086...    28   7.9  

>07_01_1182 +
           11207282-11207330,11208015-11208094,11208181-11208645,
           11213485-11213568,11213925-11214113,11214191-11214277,
           11214343-11214969
          Length = 526

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = +2

Query: 419 WGAT--VITNLLSAIPYLGTILV 481
           +GAT  VI+N LS+IPYLG I +
Sbjct: 329 YGATEFVISNTLSSIPYLGLISI 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,164,571
Number of Sequences: 37544
Number of extensions: 205562
Number of successful extensions: 279
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)