Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0088
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    27   3.3  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   5.8  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    25   7.7  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   7.7  

>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +2

Query: 137 LLMFIDYDIYILIVFLVFSVCEGSLGLSILVSIIRSHGN---DYFQRFRIL 280
           +  F+   +  LI+ +   +  G +G+SI+  +I  +GN   DYF   R+L
Sbjct: 119 IAFFVLIGLTCLILLITMILEPGLIGISIMKRLIGDNGNDERDYFVENRLL 169


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 146  FIDYDIYILIVFLVFSVCEGSLGLSILVSIIRSHGNDYFQRF 271
            +IDY I  L+  L F+   GS  LS ++ +  +   +Y+++F
Sbjct: 1711 YIDYPISELLQMLGFTASIGSSELSQVILMTVTTKKEYYKKF 1752


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 107 CFKNFFFFLVLLMFIDYDIYILIV 178
           CF   FF LVL+   DY I+I I+
Sbjct: 98  CFTIGFFLLVLVRMTDYWIFINIL 121


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 83  CSVEIRIYCFKNFFFFLVLLMFIDYDIYILIVFLVFSVCEGS-LGLSIL 226
           C V+ RI     +F  L+L  F+D  ++ +I   +FSV     LG+SIL
Sbjct: 734 CFVQPRIILGIMYFTDLILF-FLDTYLWYIIFNTIFSVLRSFVLGISIL 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,211,484
Number of Sequences: 5004
Number of extensions: 13221
Number of successful extensions: 39
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)