Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0088
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56597| Best HMM Match : COesterase (HMM E-Value=0)                  31   0.86 
SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)                29   4.6  

>SB_56597| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 505

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = +2

Query: 134 VLLMFIDYDIYILIVFLVFSVCEGSLGLSILVSIIRSHGNDYFQRF 271
           ++++ I   I I+I+ ++  + E  + LSI+++II    +DY Q +
Sbjct: 453 IIIINIIIFIIIIIIIIIIIIIENVINLSIIINIIDVDVDDYLQAY 498


>SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)
          Length = 1420

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 101  IYCFKNFFFFLVLLMFIDYDIYILIVFLVFSVCEGSLGLSILVSI 235
            +YC    F    LLM  +  I +++ F V  +    LGL  L SI
Sbjct: 1266 LYCIAAVFVVTFLLMGFNLSIALIVTFTVAMIITNLLGLMYLWSI 1310


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,798,991
Number of Sequences: 59808
Number of extensions: 77269
Number of successful extensions: 197
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)