Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0088
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    29   0.054
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    27   0.22 
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    25   0.88 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    24   1.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.0  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 28.7 bits (61), Expect = 0.054
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 279 YNDKIFIYNNFYNSFMFYKKYIL 347
           YN+K    NN YN  ++YK YI+
Sbjct: 100 YNNKYNYNNNNYNKKLYYKNYII 122


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 279 YNDKIFIYN-NFYNSFMFYKKYIL 347
           YN+  + YN N YN  ++YK YI+
Sbjct: 324 YNNNNYKYNYNNYNKKLYYKNYII 347


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +3

Query: 282 NDKIFIYNNF--YNSFMFYKKYIL 347
           N K   YNN+  YN  ++YK YI+
Sbjct: 88  NYKYSNYNNYNNYNKKLYYKNYII 111


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 282 NDKIFIYNNFYNSFMFYKKYILIGSNNI--IFYNI 380
           N K   YNN+ N++  Y  Y    +NN   ++YNI
Sbjct: 321 NYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNI 355


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 300 YNNFYNSFMFYKKYIL 347
           YNN YN  ++YK YI+
Sbjct: 338 YNN-YNKKLYYKNYII 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,961
Number of Sequences: 438
Number of extensions: 1161
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)