Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0087
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00031-1|AAZ82851.1|  330|Caenorhabditis elegans Hypothetical pr...    33   0.21 
Z71177-6|CAA94872.2| 1090|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine re...    27   7.9  

>U00031-1|AAZ82851.1|  330|Caenorhabditis elegans Hypothetical
           protein B0361.4 protein.
          Length = 330

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = -3

Query: 319 SNCLSIFCLVSSVFTVNEIFFTMR----MYFTKTGPPFKPEQVIVCSKTSAVGTYLEDLF 152
           SN  S+  ++SS+F VN  FFT +     +F  +   F P  V V  K+S    Y   ++
Sbjct: 261 SNYFSLHKIISSIFAVNSFFFTEKRKAHFHFNFSSSSFHPGFVYVDLKSSIYSCYFSIIY 320


>Z71177-6|CAA94872.2| 1090|Caenorhabditis elegans Hypothetical
           protein AC3.5 protein.
          Length = 1090

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 235 KTGPPFKPEQVIVCSKTSAVGTYLEDLFSIMFL*F 131
           K  PP KP++ I CS  SA+  +L  + +I+F  F
Sbjct: 62  KQKPPVKPKKRIACSPGSAICLFLLAVAAIIFAAF 96


>AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein64 protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -1

Query: 423 VSGASFRVVKNYKLTNGKYSQSYNYYLCLYFNKVNQIVYRFFA**ALFLQ*MKYFSP 253
           +S   F V+ N   T   Y   + Y  CL   +VN  V  FF   +  ++ + YF P
Sbjct: 90  ISFQVFAVLPNMSETIYSYVSLFAYEFCLLLLRVNNAVLDFFLIISPIVRFLVYFFP 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,918,885
Number of Sequences: 27780
Number of extensions: 230822
Number of successful extensions: 467
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)