Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0087
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    25   0.76 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   4.1  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   5.4  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   7.1  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   7.1  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   7.1  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 117 LADKRNYKNIIENKSSR*VPTAEVLLHTITCSGLKGGPVFVKYILMVKN 263
           L D+RN + + +NK +    T   +   I+   + G P+  +Y+L V N
Sbjct: 333 LLDRRNIEVVAKNKETLQAITGLKVKRRISFILVHGFPLEYEYVLAVSN 381


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -1

Query: 393 NYKLTNGKYSQS-YNYYLCLYFNKVN 319
           NY      Y+ + YN Y  LY+N +N
Sbjct: 333 NYNNNYNNYNNNNYNNYKKLYYNIIN 358


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 242 IHSHGEKYFIYCKNRAY*AKNR*TI*LTLLKYRH 343
           + SH   Y   C N  Y  K   ++ L L KY H
Sbjct: 36  LKSHSNVYQYRCANCTYATKYCHSLKLHLRKYSH 69


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -2

Query: 356 IIITYAYILIRLIKLFID 303
           I+I+Y YIL+ ++++  D
Sbjct: 94  ILISYIYILMAILRMSAD 111


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -2

Query: 356 IIITYAYILIRLIKLFID 303
           I+I+Y YIL+ ++++  D
Sbjct: 93  ILISYIYILMAILRMSAD 110


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -1

Query: 393 NYKLTNGKYSQSYNYY 346
           NY   N  Y  +YN Y
Sbjct: 321 NYNYNNNNYKYNYNNY 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,121
Number of Sequences: 438
Number of extensions: 3021
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)