Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0087
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41360.1 68415.m05105 F-box family protein similar to SKP1 in...    28   4.2  
At3g07340.1 68416.m00875 basic helix-loop-helix (bHLH) family pr...    27   9.6  

>At2g41360.1 68415.m05105 F-box family protein similar to SKP1
           interacting partner 6 [Arabidopsis thaliana]
           GI:10716957; contains Pfam profile PF00646: F-box domain
          Length = 373

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = -1

Query: 171 LIWKIYFQLCFCSFVYLPIDAATLWFLKIPKAATSRGSLV 52
           L+ K    +CFC       DA  LWF   P  AT    LV
Sbjct: 56  LLHKDSIYVCFCDRENYSTDATYLWFTLRPTTATMEYQLV 95


>At3g07340.1 68416.m00875 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 456

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 308 IDFLLSKLCFYSK*NIFHHENVFYKDGS 225
           +D LLSK  F S  N+ HH+ V   D S
Sbjct: 336 MDALLSKDIFPSSNNLMHHQQVLQLDSS 363


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,892,725
Number of Sequences: 28952
Number of extensions: 201056
Number of successful extensions: 325
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)