Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0086
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...   118   6e-28
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...    28   1.1  
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...    28   1.1  
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    28   1.4  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   3.3  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    25   7.7  

>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score =  118 bits (285), Expect = 6e-28
 Identities = 57/134 (42%), Positives = 84/134 (62%), Gaps = 6/134 (4%)
 Frame = +1

Query: 184 LYETTPSRVVPDTIERPDY----LARGKQLTLPC--LPEIKDDNQLKGMRTSCKLASTIL 345
           +Y  +P R VP  I+RPDY    ++R +Q+      L  +    Q +GMR  C+L   +L
Sbjct: 81  VYPLSPIRKVPPHIKRPDYAKTGVSRSEQIEGRSFKLKRLTPKEQ-EGMRKVCRLGREVL 139

Query: 346 SQVQNFIKPGVTTDDIDQLVHSLIIKAGAYPSPLHYKGFPKSICTSVNNVAVHGIPDLRP 525
                 ++PG TTD++D +VH+  I+   +PS L+Y  FPKS+CTSVN +  HGIPD RP
Sbjct: 140 DAAAAAVRPGTTTDELDSIVHNACIERDCFPSTLNYYAFPKSVCTSVNEIICHGIPDQRP 199

Query: 526 LSDGDIVNVDITVF 567
           L DGDIVN+D++++
Sbjct: 200 LEDGDIVNIDVSLY 213


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 295 NQLKGMRTSCKLASTILSQVQNFIKPGVTTDDIDQLVHSLIIKAGAYPSPLHY 453
           + LK +  + KL   +  +   FI   V    I +L+   + KAG +PSP+ +
Sbjct: 87  DDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVSH 139


>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 295 NQLKGMRTSCKLASTILSQVQNFIKPGVTTDDIDQLVHSLIIKAGAYPSPLHY 453
           + LK +  + KL   +  +   FI   V    I +L+   + KAG +PSP+ +
Sbjct: 87  DDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVSH 139


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
 Frame = +1

Query: 274 LPEIKDDNQLKGM-RTSCKLASTILSQVQNFIKPGVTTDDIDQLVHSLIIKAGAYPSPLH 450
           L EIK   ++  M R +    + I S VQ  IKPG+T  ++ ++++ L +  G     L 
Sbjct: 218 LREIKSPAEVDIMSRVNIATVAAIRS-VQPCIKPGITEKELAEVINMLFVYGG-----LP 271

Query: 451 YKGFPKSICTSVNNVAVHGIPDLRPLSDGDIVNVDITVFMF 573
            +  P  +         HG P  R L   + V +D+   +F
Sbjct: 272 VQESP-IVLFGERAAMPHGGPSNRRLKKSEFVLMDVGTTLF 311


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 422  KLEHTLHHFII-RDSQKVFVHLSIMWLCMVFL 514
            K     H F+I  D+ K  +HL  +WL ++FL
Sbjct: 1018 KFSQKFHGFLILHDNLKDHIHLEELWLNLLFL 1049


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 183 VKLFRKY-QTFSTTEAVSWD*RLSAPSFQPFYCNVMILLLSEY 58
           V LF  + Q F T E   W+  L+   F   +  V+ ++LS+Y
Sbjct: 666 VDLFHAFHQAFRTLEGFEWEDDLANARFFTRFFRVIYIVLSKY 708


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,503
Number of Sequences: 5004
Number of extensions: 60141
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)