Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0086
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0835 - 32099966-32100111,32100418-32100465,32100673-321007... 139 2e-33
07_03_0551 + 19374405-19374541,19375201-19375435,19375539-193757... 128 3e-30
04_04_1111 - 30979334-30979479,30979769-30979866,30980364-309804... 125 3e-29
07_03_0151 - 14465479-14465675,14466280-14466401,14466934-144670... 117 1e-26
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 68 6e-12
07_01_0339 - 2443123-2443508,2443590-2443651,2443692-2443704,244... 30 1.5
02_03_0121 + 15468894-15468906,15469008-15469193,15474157-154746... 30 2.0
07_01_0216 - 1615604-1615626,1615835-1617782 29 2.6
03_03_0274 - 16089322-16089365,16089604-16089616,16090367-160907... 28 6.0
03_02_0975 - 12836667-12836791,12838422-12838648,12838721-128387... 28 6.0
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210... 28 6.0
01_01_1101 + 8731427-8732938 28 6.0
03_02_0803 + 11365959-11366390,11366470-11366502,11367158-113672... 28 7.9
>02_05_0835 -
32099966-32100111,32100418-32100465,32100673-32100770,
32101269-32101348,32101615-32101686,32102260-32102301,
32102382-32102543,32102971-32103199,32103681-32103747,
32103907-32104003
Length = 346
Score = 139 bits (336), Expect = 2e-33
Identities = 63/127 (49%), Positives = 87/127 (68%)
Frame = +1
Query: 190 ETTPSRVVPDTIERPDYLARGKQLTLPCLPEIKDDNQLKGMRTSCKLASTILSQVQNFIK 369
+ +P VP I+RP Y+ ++ L PEI D+ ++ MR S KLA+ +L ++
Sbjct: 72 KVSPRLSVPKHIQRPPYVNARQRPGLHNGPEIHDERGIECMRASGKLAAQVLKFAGTLVE 131
Query: 370 PGVTTDDIDQLVHSLIIKAGAYPSPLHYKGFPKSICTSVNNVAVHGIPDLRPLSDGDIVN 549
PG+TTD+ID+ VH +I+ GAYPSPL Y GFPKS+CTSVN HGIPD RPL DGDI+N
Sbjct: 132 PGITTDEIDKAVHQMIVDNGAYPSPLGYCGFPKSVCTSVNECICHGIPDSRPLEDGDIIN 191
Query: 550 VDITVFM 570
+D+TV++
Sbjct: 192 IDVTVYL 198
>07_03_0551 +
19374405-19374541,19375201-19375435,19375539-19375700,
19375778-19375819,19375941-19376012,19376291-19376370,
19376962-19377059,19377691-19377738,19377983-19378083,
19378331-19378426,19378599-19378689,19379510-19379706,
19380918-19381004,19381208-19381488,19381653-19381743
Length = 605
Score = 128 bits (310), Expect = 3e-30
Identities = 60/125 (48%), Positives = 80/125 (64%)
Frame = +1
Query: 196 TPSRVVPDTIERPDYLARGKQLTLPCLPEIKDDNQLKGMRTSCKLASTILSQVQNFIKPG 375
+P VP+ I RP Y+ + L + +I + GMR +CKLA+ L IKP
Sbjct: 67 SPQLPVPEHIPRPSYVGSNRPQELSSVRQIHSAEGIAGMRAACKLAARALDFAGTLIKPS 126
Query: 376 VTTDDIDQLVHSLIIKAGAYPSPLHYKGFPKSICTSVNNVAVHGIPDLRPLSDGDIVNVD 555
VTT++ID+ VH++II+AGAYPS L Y GFPKSICTS+N HG+PD L GDI+NVD
Sbjct: 127 VTTNEIDREVHNMIIEAGAYPSQLGYGGFPKSICTSLNECVCHGVPDSTQLQTGDIMNVD 186
Query: 556 ITVFM 570
+ VF+
Sbjct: 187 VNVFL 191
>04_04_1111 -
30979334-30979479,30979769-30979866,30980364-30980443,
30980685-30980756,30980860-30980901,30981009-30981170,
30981276-30981427,30981453-30981538,30981654-30981726,
30982706-30982889
Length = 364
Score = 125 bits (302), Expect = 3e-29
Identities = 55/116 (47%), Positives = 77/116 (66%)
Frame = +1
Query: 223 IERPDYLARGKQLTLPCLPEIKDDNQLKGMRTSCKLASTILSQVQNFIKPGVTTDDIDQL 402
I +P Y+ + + ++ D + M+ +C+LA+ +L +KP VTTD+ID+
Sbjct: 117 ITQPPYVGKKDASEIASEIQMHDKVSIIHMKAACELAARVLEYAGTLVKPSVTTDEIDKA 176
Query: 403 VHSLIIKAGAYPSPLHYKGFPKSICTSVNNVAVHGIPDLRPLSDGDIVNVDITVFM 570
VH +II AGAYPSPL Y GFPKS+CTSVN HGIPD R L DGDI+N+D+TV++
Sbjct: 177 VHKMIIDAGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRELQDGDIINIDVTVYL 232
>07_03_0151 -
14465479-14465675,14466280-14466401,14466934-14467081,
14467146-14467167,14467299-14467393,14467395-14467438,
14467750-14467841,14467911-14467982,14468188-14468229,
14468333-14468494,14468631-14468683,14468808-14468925,
14468974-14469150,14469573-14469639,14470195-14470273,
14473805-14473862,14474257-14474346,14474429-14474540,
14474649-14474912,14475361-14475463,14476200-14476278,
14476748-14476852
Length = 766
Score = 117 bits (281), Expect = 1e-26
Identities = 49/95 (51%), Positives = 67/95 (70%)
Frame = +1
Query: 286 KDDNQLKGMRTSCKLASTILSQVQNFIKPGVTTDDIDQLVHSLIIKAGAYPSPLHYKGFP 465
+D+ L+ +C+L + +L +KP TTD+ID+ VH +II AGAYPSPL Y GFP
Sbjct: 408 EDEGALEARHAACELTARVLEYAGTLVKPLATTDEIDRAVHQMIIDAGAYPSPLGYGGFP 467
Query: 466 KSICTSVNNVAVHGIPDLRPLSDGDIVNVDITVFM 570
KS+CTSVN HGIPD R L +GDI+N+D+TV++
Sbjct: 468 KSVCTSVNECICHGIPDSRVLQNGDIINIDVTVYL 502
>10_08_0584 + 18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 68.1 bits (159), Expect = 6e-12
Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 5/132 (3%)
Frame = +1
Query: 187 YETTPSRVVPDTIERPDYLARGKQLTLPCLP-----EIKDDNQLKGMRTSCKLASTILSQ 351
Y + VVPD IE+PD+ G P EIK Q++ MR +C++A +L
Sbjct: 964 YPISKMCVVPDKIEKPDWALDGTPKIEPDSDLQKRVEIKTPEQIERMRETCRIAREVLDA 1023
Query: 352 VQNFIKPGVTTDDIDQLVHSLIIKAGAYPSPLHYKGFPKSICTSVNNVAVHGIPDLRPLS 531
IKPG+TTD+ID++VH + G K + + T ++ V+ R L
Sbjct: 1024 AARIIKPGITTDEIDRVVHEETVARG-------LKEY--DMLTLLSLVS-------RKLE 1067
Query: 532 DGDIVNVDITVF 567
DGDIVNVD+TV+
Sbjct: 1068 DGDIVNVDVTVY 1079
>07_01_0339 -
2443123-2443508,2443590-2443651,2443692-2443704,
2444483-2444495
Length = 157
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 520 RPLSDGDIVNVDITVF 567
R L DGDIVNVD+TV+
Sbjct: 9 RKLEDGDIVNVDVTVY 24
>02_03_0121 + 15468894-15468906,15469008-15469193,15474157-15474650,
15475090-15475521,15475597-15475821,15476065-15476346,
15476432-15476704,15477680-15477805,15481010-15481288,
15481313-15481588,15481670-15482113,15482200-15482397,
15482574-15482732,15482832-15483085,15483164-15483316,
15483395-15483683,15483769-15483807,15483913-15483951
Length = 1386
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/72 (30%), Positives = 31/72 (43%)
Frame = +1
Query: 172 KKFYLYETTPSRVVPDTIERPDYLARGKQLTLPCLPEIKDDNQLKGMRTSCKLASTILSQ 351
KK ++P R+ D +E GK+ L +P + DD L M T+CK +
Sbjct: 1102 KKSRKAHSSPQRITLDKLEAKGRGRGGKEFQLG-MPLVGDD-VLAAMGTACKDLHAYYME 1159
Query: 352 VQNFIKPGVTTD 387
N KP TD
Sbjct: 1160 KSNARKPNKATD 1171
>07_01_0216 - 1615604-1615626,1615835-1617782
Length = 656
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +1
Query: 376 VTTDDIDQLVHSLI-IKAGA-YPSPLHYKGFPKSICTSVNNVAVHGI-PDLRPLSDG 537
VT D + +L + I +K A YPSPLH++ P S + V GI P L+ G
Sbjct: 47 VTPDGLVELTNDGIRVKGHAFYPSPLHFRETPNGTVQSFSVSFVFGIVPTFSDLNSG 103
>03_03_0274 - 16089322-16089365,16089604-16089616,16090367-16090714,
16090771-16090974,16091403-16091504,16091710-16091741,
16092668-16093655,16094461-16094711,16095786-16097795,
16097903-16097954
Length = 1347
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +1
Query: 364 IKPGVTTDDIDQL---VHSLIIKAGAYPSPLHYKGFP 465
I PG+T ID+L V +I+ AG ++Y+GFP
Sbjct: 1300 IHPGITPVIIDELTECVCDIILSAGRKERQVNYEGFP 1336
>03_02_0975 -
12836667-12836791,12838422-12838648,12838721-12838785,
12839292-12839407,12839514-12839771,12839937-12840195,
12840308-12840412
Length = 384
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -2
Query: 210 NSTWSCFIQVKLFRKY-QTFSTTEAVSWD*RLSAPSFQPFYCNVMILLLSEYVTPPRSA 37
NS+ S + + L R + FS + A + D SAPS P C+V++ + + P +A
Sbjct: 42 NSSRSAYASISLARDFFDEFSLSAAAAAD---SAPSSTPLQCSVLLKSVLSVLRTPTAA 97
>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
20921184-20921263,20922759-20922875,20923089-20923136,
20923509-20923601,20923881-20923958,20924114-20924218,
20924543-20925212,20925253-20925350,20925887-20925963,
20926035-20926117,20926208-20926287,20927060-20927139,
20927698-20927743,20928709-20929181,20929234-20929579
Length = 2139
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = +1
Query: 286 KDDNQLKGMRTSCKLASTILSQVQNFIKPGVTTDDIDQLVHSLIIKAGAYPSPLHYKGFP 465
K + R+S K++S+ S++ +F + D + L+H+ P +
Sbjct: 1080 KKGKNINKNRSSTKISSSEASKLVSFSNDSPSLDPSELLLHT---------RPPKFGSCS 1130
Query: 466 KSICTSVNNVAVHGIPDLRPLS-DGD 540
K + +++++V +HG ++RP D D
Sbjct: 1131 KVVTSAIHDVGMHGYDNMRPFGIDND 1156
>01_01_1101 + 8731427-8732938
Length = 503
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 370 PGVTTDDIDQLVHSLIIKAGAYPSPLHYKGFPKSICTSVNNVAVHGIPDLRPLSDGDI 543
PG ++ D+D +VH + G++PS LH + +C +N+ G L P S D+
Sbjct: 446 PGASSIDVDGMVHEFTSRDGSHPS-LH--KIREVLCAINSNIKSVGHIALLPESLHDV 500
>03_02_0803 +
11365959-11366390,11366470-11366502,11367158-11367214,
11367784-11367945,11367987-11368139,11368218-11368295,
11368377-11368469,11368981-11369071,11369091-11369209
Length = 405
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/28 (57%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +1
Query: 238 YLARGK-QLTLPCLPEIKDDNQLKGMRT 318
Y+ARGK QL LP L ++K+ +QL MRT
Sbjct: 281 YIARGKLQLALP-LEKVKEMSQLSLMRT 307
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,594,048
Number of Sequences: 37544
Number of extensions: 328539
Number of successful extensions: 682
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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