Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0086
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)             134   5e-32
SB_30102| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   6e-07
SB_48682| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)               31   1.1  
SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_47506| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)                   29   4.6  
SB_7895| Best HMM Match : uDENN (HMM E-Value=5.7e-25)                  29   4.6  

>SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score =  134 bits (325), Expect = 5e-32
 Identities = 62/127 (48%), Positives = 86/127 (67%)
 Frame = +1

Query: 187 YETTPSRVVPDTIERPDYLARGKQLTLPCLPEIKDDNQLKGMRTSCKLASTILSQVQNFI 366
           Y+ +P   VP  I  P Y   GK    P   EIK   Q++ +R SC+LA  ++   +  +
Sbjct: 14  YKVSPPHPVPAHIPTPCYAETGKVPPHPWSVEIKTKQQIEAVRKSCQLARCVMRMAKQIV 73

Query: 367 KPGVTTDDIDQLVHSLIIKAGAYPSPLHYKGFPKSICTSVNNVAVHGIPDLRPLSDGDIV 546
           K G+TT++ID  VH  II+ GAYPSPL+Y+GFPKS+CTSVN VAVHGIP+ R L +GD++
Sbjct: 74  KVGITTEEIDYHVHKAIIEHGAYPSPLNYRGFPKSVCTSVNEVAVHGIPNSRCLQNGDLL 133

Query: 547 NVDITVF 567
           +VDI++F
Sbjct: 134 SVDISLF 140


>SB_30102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 22/29 (75%), Positives = 24/29 (82%)
 Frame = +1

Query: 481 SVNNVAVHGIPDLRPLSDGDIVNVDITVF 567
           S+N V  HGIPD RPL DGDIVN+DITVF
Sbjct: 2   SINEVICHGIPDKRPLEDGDIVNLDITVF 30


>SB_48682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +1

Query: 187 YETTPSRVVPDTIERPDYLARGKQLTLPCLPEIKDDNQLKGMRTSCKLASTILSQVQNFI 366
           Y+ +P   VP  I  P Y   GK    P   EIK   Q++ +R SC+LA  ++   +  +
Sbjct: 100 YKVSPPHPVPAHIPTPCYAETGKVPPHPWSVEIKTKQQIEAVRKSCQLARCVMRMAKQIV 159

Query: 367 K 369
           K
Sbjct: 160 K 160


>SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)
          Length = 465

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
 Frame = +1

Query: 277 PEIKDDNQLKGMRTSCKLASTILSQVQNFIKPGVTTDDIDQLVHSLIIKAG--AYPSPLH 450
           P I +D  +   + +  +A+ IL ++      G T   + +   +LI++     Y     
Sbjct: 14  PTIAEDVVVTKYKMAGDMANRILLKLIEAANAGTTARTLCEKGDALILEETDKVYKKEKE 73

Query: 451 YK-GFPKSICTSVNNVAVHGIPDLR----PLSDGDIVNVDITV 564
            K G     C SVNN   H  P L      L+DGD+V +D  V
Sbjct: 74  LKKGIAFPTCISVNNCVCHFSPLLSEPDITLNDGDLVKIDFGV 116


>SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1786

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +1

Query: 325 KLASTILSQVQNFIKPGVTTDDIDQLVHSLIIKAGAYPSPLHYKGFPKSICTSVNNV 495
           K A+  L  +    K GV T +I +   +LI  +  Y S + + G PK +C S+ N+
Sbjct: 584 KKANRRLYAICQLKKCGVPTSEIIKAYCALIRSSTEYASVV-FAGLPKYLCNSLENI 639


>SB_47506| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 373 GVTTDDIDQLVHSLIIKAGAYPSPLHYKGFPKSICTSVNNVAVHGIPDLRP 525
           GV+TDDI  +  SL+     YPS + +   P  +  S+  V  H +  + P
Sbjct: 258 GVSTDDIIVIYRSLVQSTLEYPSVV-FADLPHYLSDSLERVQKHALAIIYP 307


>SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)
          Length = 3999

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +3

Query: 66   LAIKSLHCNKKAEMRVPKAVNPRKRLQLLKKFGIYEKVLPV*NNSK 203
            + +  LH  + A +R+   +  +K L+++K +G    +L + NN K
Sbjct: 3471 IVLDELHIVRNASIRIVNELETKKLLKIMKLYGDKSGLLHIYNNQK 3516


>SB_7895| Best HMM Match : uDENN (HMM E-Value=5.7e-25)
          Length = 945

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 172 KKFYLYETTPSRVVPDTIERPDYLAR 249
           K+ Y+ E  P  V  DT+E+PD  +R
Sbjct: 690 KQLYIVEEAPRAVAEDTLEKPDRSSR 715


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,910,923
Number of Sequences: 59808
Number of extensions: 408402
Number of successful extensions: 817
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)