Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0086
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024757-4|AAK68429.2|  371|Caenorhabditis elegans Methionine am...   116   1e-26
U23528-6|AAK31385.1|  216|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    28   5.4  
AF016415-4|AAW88419.1|  298|Caenorhabditis elegans Serpentine re...    27   9.4  

>AC024757-4|AAK68429.2|  371|Caenorhabditis elegans Methionine
           aminopeptidase protein 1 protein.
          Length = 371

 Score =  116 bits (280), Expect = 1e-26
 Identities = 59/141 (41%), Positives = 82/141 (58%), Gaps = 7/141 (4%)
 Frame = +1

Query: 166 FTKKFYLYETTPSRVVPDTIERPDYLARGKQLTLP-------CLPEIKDDNQLKGMRTSC 324
           FT        T  R VPD I RPDY    + ++L         + ++  D + +G++ +C
Sbjct: 65  FTGSLRPGRVTDRRPVPDHIPRPDYALHPQGVSLEERQSKSERVIKVLTDEEKEGLKVAC 124

Query: 325 KLASTILSQVQNFIKPGVTTDDIDQLVHSLIIKAGAYPSPLHYKGFPKSICTSVNNVAVH 504
           KL    L++      PGVTT++ID++VH   I+   YPSPL Y  FPKS CTSVN V  H
Sbjct: 125 KLGRECLNEAAKACGPGVTTEEIDRVVHEAAIERDCYPSPLGYYKFPKSCCTSVNEVICH 184

Query: 505 GIPDLRPLSDGDIVNVDITVF 567
           GIPD+R L +GD+ NVD+TV+
Sbjct: 185 GIPDMRKLENGDLCNVDVTVY 205


>U23528-6|AAK31385.1|  216|Caenorhabditis elegans Hypothetical
           protein B0034.4 protein.
          Length = 216

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 277 PEIKDDNQLKGMRTSCKLASTILSQVQNFIKPGVTTDDIDQLVH 408
           PE+  DN +   ++   +A T  ++ +N +KPG   D  D  +H
Sbjct: 144 PELHPDNHVVKAKSPKPVARTPTARHRNALKPGKINDKSDDTLH 187


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = +1

Query: 181  YLYETT--PSRVVPDTIERPDYLARGKQLTLPCLPEIKDDNQLKGMRTSCKLASTILSQV 354
            Y  E T  P R    TI +P    RG Q+T+     I   +   G+R   +L +T+ S  
Sbjct: 2138 YTVEVTERPHRAGKGTITKPSGSRRGAQMTVARTVSIPFSSDFSGIR--MRLGTTLASTS 2195

Query: 355  QNFIKPGVTTDDIDQL 402
               I  G   + I+++
Sbjct: 2196 VGVIPRGALVEFIEEM 2211


>AF016415-4|AAW88419.1|  298|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 31 protein.
          Length = 298

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 503 CTATLLTDVQILFGN--PL**SGEGYAPALIINEWTS*SMSSVVTPGFIKF 357
           CT  L   + +L GN  P   SGE   P  ++ + T  ++ S+V    +KF
Sbjct: 227 CTVFLFDFIPVLCGNMWPQYFSGENLGPFTVVMKVTGCAIESIVVSCLLKF 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,157,110
Number of Sequences: 27780
Number of extensions: 318217
Number of successful extensions: 637
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)