Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0085
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72)                   30   1.8  
SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_35352| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)                27   9.7  
SB_1462| Best HMM Match : MFS_1 (HMM E-Value=0.042)                    27   9.7  
SB_36003| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_31530| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_261| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.7  

>SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72)
          Length = 1161

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 422 EIYEGFLAGQN*TCYKCLRWY 484
           +I +G L GQ   C++CLRW+
Sbjct: 117 DINDGSLCGQTQCCHRCLRWW 137


>SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1175

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 422 EIYEGFLAGQN*TCYKCLRWY 484
           +I +G L GQ   C++CLRW+
Sbjct: 838 DINDGSLCGQTQCCHRCLRWW 858


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 365  EADYWEQMKAKYDPKDEFKEIY-EGFLAG 448
            +AD W  + A YD +D F +IY  G L G
Sbjct: 5963 DADEWYHVAATYDSRDRFAKIYINGELKG 5991


>SB_35352| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)
          Length = 221

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 230 DEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYD-P 406
           D  +C+ DG+ +   +K   Q A  K +  +K   R++   +   E     + K K+D P
Sbjct: 95  DVAKCSQDGEGVVGPLKQLQQLAGGKASSTKKHQERQVAMVVNLSEVCNGVEAKPKHDSP 154

Query: 407 KD 412
            D
Sbjct: 155 MD 156


>SB_1462| Best HMM Match : MFS_1 (HMM E-Value=0.042)
          Length = 277

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +2

Query: 11  GLQVTLNLSQCLGDIAFVLIKTIADMKCLTIAALLFVAGLSIAEKYTDKY 160
           G ++TL +S  L   AF+    +     L I  LLF AGLS+A     +Y
Sbjct: 171 GRKITLTVSVALQAAAFIGASFVTSHIALII--LLFFAGLSLASSIACQY 218


>SB_36003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -2

Query: 99  VRHFMSAMVLIN--TKAMSPRH*LRFSVTCSPGDP 1
           ++HF   ++  N   K    RH    S +CSPGDP
Sbjct: 1   MKHFTDTLISANILNKIKETRHLQAASNSCSPGDP 35


>SB_31530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 661

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 24/107 (22%), Positives = 43/107 (40%)
 Frame = +2

Query: 167 IDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIV 346
           +  D  LE+   + PY  C+ ++      G    + ++   Q   AK   K+  S  +  
Sbjct: 541 VPCDRKLESAFAINPYPTCLYEKALAVRLGLR-DSRVQVWFQNRRAK--SKRNRSGCQSS 597

Query: 347 KHIKQHEADYWEQMKAKYDPKDEFKEIYEGFLAGQN*TCYKCLRWYN 487
            +  Q+E DY+    + Y PK+           G+   CY+ L  Y+
Sbjct: 598 TYRGQNEGDYFSPTASDYSPKNSEYHTNTSDCFGEARECYEELSTYD 644


>SB_261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 99 VRHFMSAMVLINTKAMSPRH*LRFSVTCSPGDP 1
          ++HF   ++  N KA++ +     S +CSPGDP
Sbjct: 1  MKHFTDTLISANIKALTNKS----SNSCSPGDP 29


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,029,710
Number of Sequences: 59808
Number of extensions: 378220
Number of successful extensions: 1735
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1733
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)