Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0085
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40410.1 68418.m04901 pentatricopeptide (PPR) repeat-containi...    29   2.0  
At3g24260.1 68416.m03047 hypothetical protein                          29   2.0  
At5g55180.1 68418.m06879 glycosyl hydrolase family 17 protein si...    28   6.0  
At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve...    27   7.9  

>At5g40410.1 68418.m04901 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1155

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 278 KDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGF 439
           +  M TACA+C D   V ARK+ + + + +   W  M + Y    E +E    F
Sbjct: 177 RTAMVTACARCGD--VVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVF 228


>At3g24260.1 68416.m03047 hypothetical protein
          Length = 374

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
 Frame = +2

Query: 152 DKYDNIDVDEILENRKLLVPYIKCVL----DEGRCTPDGKELKAHIKDGMQTACAKCTDK 319
           D  +  + + IL N   ++P I+ V     D  R   D  E K  + + ++    + T  
Sbjct: 53  DHDEKPEENPILLNEPKMIPRIRIVYKPKDDVERKMKDRLEAKQKLTELLKAIEERLTRS 112

Query: 320 QKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGFL 442
           +      + K  K H  DY + +K+     D++K +Y+ F+
Sbjct: 113 ELRVYTCLCKDFKSHRIDYSQFVKSLQRLIDKYKNLYQRFV 153


>At5g55180.1 68418.m06879 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 460

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +2

Query: 188 ENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAK 307
           +N++ +VP    ++ +  C  +GK  K  +++G+  AC +
Sbjct: 355 DNKEKVVPVKPSLVGQTWCVANGKTTKEKLQEGLDYACGE 394


>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
           40S ribosomal protein S26
          Length = 130

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 257 KELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEA 370
           K  + H+K    + C KC  K K   R IV++I +  A
Sbjct: 12  KHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAA 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,180,663
Number of Sequences: 28952
Number of extensions: 262809
Number of successful extensions: 654
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)