Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0084
         (532 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   1.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   3.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   3.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   7.9  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +2

Query: 299 YGVPDIDVFQTVDLWEKKDI--AQVVSTLF 382
           Y   D D+F    LW K +I  AQ + +L+
Sbjct: 116 YHAKDFDIFFKTALWAKNNINEAQYIYSLY 145


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +2

Query: 299 YGVPDIDVFQTVDLWEKKDI--AQVVSTLF 382
           Y   D D+F    LW K +I  AQ + +L+
Sbjct: 116 YHAKDFDIFFKTALWAKNNINEAQYIYSLY 145


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 171 LRTSSNSSPGGNLAPR 124
           LR   + SPGGN  PR
Sbjct: 139 LRHKGDGSPGGNGGPR 154


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 171 LRTSSNSSPGGNLAPR 124
           LR   + SPGGN  PR
Sbjct: 139 LRHKGDGSPGGNGGPR 154


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +2

Query: 2   HSEKALTQSHNMSLERQVRAKIASKRNPEKEKEAQEWIE 118
           H+EK        S ER  R++   +++ + E+E +++ E
Sbjct: 256 HNEKEKLLEERTSRERYSRSREREQKSYKNEREYRKYGE 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,494
Number of Sequences: 438
Number of extensions: 3812
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)