Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0084
(532 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09170.1 68414.m01024 kinesin motor protein-related similar t... 50 1e-06
At2g47500.1 68415.m05929 kinesin motor protein-related 49 2e-06
At5g27000.1 68418.m03221 kinesin motor protein-related non-conse... 47 7e-06
At3g10310.1 68416.m01237 kinesin motor protein-related similar t... 44 8e-05
At1g63640.2 68414.m07198 kinesin motor protein-related C-termina... 44 8e-05
At1g63640.1 68414.m07197 kinesin motor protein-related C-termina... 44 8e-05
At5g41310.1 68418.m05020 kinesin motor protein-related 39 0.002
At5g35700.1 68418.m04269 fimbrin-like protein, putative similar ... 39 0.002
At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s... 35 0.039
At2g04750.1 68415.m00485 fimbrin-like protein, putative similar ... 35 0.039
At3g44730.1 68416.m04814 kinesin motor protein-related similar t... 34 0.069
At5g04980.1 68418.m00527 endonuclease/exonuclease/phosphatase fa... 33 0.091
At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t... 33 0.12
At5g55400.1 68418.m06902 fimbrin-like protein, putative similar ... 33 0.16
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 30 1.1
At5g02790.1 68418.m00221 In2-1 protein, putative similar to In2-... 29 2.0
At5g02780.1 68418.m00220 In2-1 protein, putative similar to In2-... 29 2.0
At3g12580.1 68416.m01567 heat shock protein 70, putative / HSP70... 29 2.6
At4g33650.1 68417.m04780 dynamin-like protein 2a (ADL2a) identic... 28 3.4
At3g49210.1 68416.m05378 expressed protein 28 3.4
At5g67270.1 68418.m08480 microtubule-associated EB1 family prote... 28 4.5
At5g14570.1 68418.m01708 transporter, putative similar to trans-... 28 4.5
At1g78210.1 68414.m09114 hydrolase, alpha/beta fold family prote... 27 6.0
>At1g09170.1 68414.m01024 kinesin motor protein-related similar to
GB:AAB61066
Length = 1010
Score = 49.6 bits (113), Expect = 1e-06
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 19/128 (14%)
Frame = +2
Query: 98 EAQEWIE---GVLGAKFPPGELFED----VLKDGTVLCQLINKLKPGSVPK--------- 229
EA W+ GV+G + P + E+ L+ G +LC ++N++KPG+VPK
Sbjct: 59 EAARWVRNTLGVVGGRDLPADPSEEDFRIALRSGILLCNVLNRVKPGAVPKVVEAPNDPL 118
Query: 230 INTTG---GQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRET 400
+N G F+ EN+ NF ++ G+P F+ D + A++V + AL ++
Sbjct: 119 VNQDGAALSAFQYFENLRNFLVFVEEMGIP---TFEVSDFEKGGKSARIVECVLAL--KS 173
Query: 401 YRHAEWSG 424
YR + SG
Sbjct: 174 YREWKQSG 181
>At2g47500.1 68415.m05929 kinesin motor protein-related
Length = 974
Score = 49.2 bits (112), Expect = 2e-06
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 19/141 (13%)
Frame = +2
Query: 23 QSHNMSLERQVRAKIASKRNPEKEKEAQEWIE---GVLGAKFPPGELFEDVLK----DGT 181
Q H L ++ + EA W+ GV+GAK P E E+ L+ G
Sbjct: 24 QQHGNGLRDHDLVSRRAEEAASRRYEAANWLRRMVGVVGAKDLPAEPTEEGLRLGLRSGI 83
Query: 182 VLCQLINKLKPGSVPKI------------NTTGGQFKMMENITNFQSAIKAYGVPDIDVF 325
+LC+++NK++PG+V K+ F+ EN+ NF AI+ G P F
Sbjct: 84 ILCKVLNKVQPGAVSKVVESPCDAILVADGAPLSAFQYFENVRNFLVAIQEMGFP---TF 140
Query: 326 QTVDLWEKKDIAQVVSTLFAL 388
+ DL + + ++VV+ + A+
Sbjct: 141 EASDLEQGGNASRVVNCVLAI 161
>At5g27000.1 68418.m03221 kinesin motor protein-related
non-consensus AT donor splice site at exon 12;
non-consensus AC acceptor splice site at exon 13
Length = 987
Score = 47.2 bits (107), Expect = 7e-06
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Frame = +2
Query: 98 EAQEWIEGVLGA---KFPPGELFEDV----LKDGTVLCQLINKLKPGSVPKI-----NTT 241
EA W+ ++G K PGE E+ L+ G VLC ++NK+ PGSV K+ +
Sbjct: 49 EAAGWLRDMIGVSNGKDFPGEPSEEEFRLGLRSGIVLCNVLNKVNPGSVSKVVEAPDDVA 108
Query: 242 GG----QFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFAL 388
G F+ ENI NF AI+ G+P F+ D+ + ++V+ + AL
Sbjct: 109 DGAALSAFQYFENIRNFLVAIEEMGLPS---FEASDMEKGGKSIRIVNCILAL 158
>At3g10310.1 68416.m01237 kinesin motor protein-related similar to
carboxy-terminal kinesin 2 GB:P79955 [Xenopus laevis]
Length = 897
Score = 43.6 bits (98), Expect = 8e-05
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 18/126 (14%)
Frame = +2
Query: 65 IASKRNPE---KEKEAQEWIEGVLGA----KFPPGELFEDVLKDGTVLCQLINKLKPGSV 223
+AS+R E + +A +W++ V+G P + F L++G +LC INK+ PG+V
Sbjct: 10 LASRRAEEAAARRFQAVQWLKSVVGQLGIPNQPSEKEFISCLRNGMILCNAINKIHPGAV 69
Query: 224 PKI----NTTGGQFKM------MENITNFQSAIKAYGVPDIDVFQ-TVDLWEKKDIAQVV 370
K+ + G++++ EN+ NF A++ +P + D E + +VV
Sbjct: 70 SKVVENYSYLNGEYQLPPAYQYFENVRNFLVALETLRLPGFEASDLEKDNLESGSVTKVV 129
Query: 371 STLFAL 388
+ L
Sbjct: 130 DCILGL 135
>At1g63640.2 68414.m07198 kinesin motor protein-related C-terminal
region is similar to C-term region of kinesin motor
protein GB:AAB51397 (Mus musculus); contains Pfam
profile: PF00225 Kinesin motor domain
Length = 1065
Score = 43.6 bits (98), Expect = 8e-05
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Frame = +2
Query: 107 EWIEGVLGAKFPPGELFED----VLKDGTVLCQLINKLKPGSVPKINTTGGQFKMME-NI 271
EW+ L P E ED L+DGTVLC L+N+L PGS+ GG F+ I
Sbjct: 47 EWLNETLPYLKLPWEASEDELRACLRDGTVLCSLLNQLSPGSM----RMGGSFEPASVKI 102
Query: 272 TNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFAL 388
F +A+ +P F+ D+ E+ D+ V+ +L AL
Sbjct: 103 ERFLTAMDEMALPR---FEVSDI-EQGDMVPVLQSLKAL 137
>At1g63640.1 68414.m07197 kinesin motor protein-related C-terminal
region is similar to C-term region of kinesin motor
protein GB:AAB51397 (Mus musculus); contains Pfam
profile: PF00225 Kinesin motor domain
Length = 1064
Score = 43.6 bits (98), Expect = 8e-05
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Frame = +2
Query: 107 EWIEGVLGAKFPPGELFED----VLKDGTVLCQLINKLKPGSVPKINTTGGQFKMME-NI 271
EW+ L P E ED L+DGTVLC L+N+L PGS+ GG F+ I
Sbjct: 47 EWLNETLPYLKLPWEASEDELRACLRDGTVLCSLLNQLSPGSM----RMGGSFEPASVKI 102
Query: 272 TNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFAL 388
F +A+ +P F+ D+ E+ D+ V+ +L AL
Sbjct: 103 ERFLTAMDEMALPR---FEVSDI-EQGDMVPVLQSLKAL 137
>At5g41310.1 68418.m05020 kinesin motor protein-related
Length = 961
Score = 39.1 bits (87), Expect = 0.002
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Frame = +2
Query: 80 NPEKEKEAQEWIEGVLGAKFPPGELFEDVLK----DGTVLCQLINKLKPGSVPKINTTGG 247
N + + EW+ L P E E+ L+ DGTVLC L+N+L PGS+ GG
Sbjct: 39 NKQGHQSLVEWLNETLPYLNLPWEASEEELRACLVDGTVLCNLLNQLSPGSM----RMGG 94
Query: 248 QFKM-MENITNFQSAIKAYGVP 310
F+ NI F +A+ +P
Sbjct: 95 SFEPGCVNIERFLAAMDEMTLP 116
>At5g35700.1 68418.m04269 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893, fimbrin [Schizosaccharomyces pombe]
GI:3057144; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 687
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = +2
Query: 140 PPGELFEDVLKDGTVLCQLINKLKPGSVPK--INT--TGGQFKMMENITNFQSAIKAYGV 307
P F D++KDG +LC+LIN PG++ + INT T ++ EN+T ++ KA G
Sbjct: 150 PATNAFFDLVKDGVLLCKLINVAVPGTIDERAINTKKTLNPWERNENLTLGLNSAKAIGC 209
Query: 308 PDIDV 322
+++
Sbjct: 210 TVVNI 214
>At5g48460.1 68418.m05992 fimbrin-like protein, putative strong
similarity to fimbrin-like protein AtFim2 [Arabidopsis
thaliana] GI:2737926; contains Pfam profile PF00307:
Calponin homology (CH) domain
Length = 654
Score = 34.7 bits (76), Expect = 0.039
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Frame = +2
Query: 149 ELFEDVLKDGTVLCQLINKLKPGSVPK--INTTG--GQFKMMENITNFQSAIKAYGVPDI 316
+LFE V KDG +LC+LIN PG++ + INT ++ EN T ++ KA G +
Sbjct: 156 DLFE-VAKDGVLLCKLINVAVPGTIDERAINTKSMLNPWERNENHTLCLNSAKAIGCTVV 214
Query: 317 DV 322
++
Sbjct: 215 NI 216
Score = 31.9 bits (69), Expect = 0.28
Identities = 23/74 (31%), Positives = 36/74 (48%)
Frame = +2
Query: 2 HSEKALTQSHNMSLERQVRAKIASKRNPEKEKEAQEWIEGVLGAKFPPGELFEDVLKDGT 181
H TQ+ +S + I R +EK + WI G+ + +FED L+DG
Sbjct: 370 HRNGLSTQTKQISFLENLADDIQISR---EEKAFRFWINSFDGSVYI-NNVFED-LRDGW 424
Query: 182 VLCQLINKLKPGSV 223
+L Q ++K+ PG V
Sbjct: 425 ILLQTLDKVSPGIV 438
>At2g04750.1 68415.m00485 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 652
Score = 34.7 bits (76), Expect = 0.039
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Frame = +2
Query: 11 KALTQSHNMSLERQVRAKIASKRNPEKEKEAQEWIEGVLGAKFPPGELFEDVLKDGTVLC 190
K T + + S+ +A S N + E ++ L LF D++KDG +LC
Sbjct: 104 KTSTTTFHHSINESEKASYVSHINSYLKDEPN--LKSYLPINPTTNALF-DLVKDGVLLC 160
Query: 191 QLINKLKPGSVPK--INTTG--GQFKMMENITNFQSAIKAYGVPDIDV 322
+LIN PG++ + INT ++ EN++ ++ KA G +++
Sbjct: 161 KLINIAVPGTIDERAINTKKELNPWERTENLSLCLNSAKAIGCTVVNI 208
>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
other kinesin-like proteins of A. thaliana: F02P16.12
(PID:g2191180), katA (D11371), katB (D21137), and katC
(D21138); contains non-consensus AT-AC splice sites at
intron 10
Length = 1087
Score = 33.9 bits (74), Expect = 0.069
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 140 PPGELFEDVLKDGTVLCQLINKLKPGSVPKI 232
P + F L++G +LC ++NK+ PGSV K+
Sbjct: 13 PSEDEFSLALRNGLILCNVLNKVNPGSVLKV 43
>At5g04980.1 68418.m00527 endonuclease/exonuclease/phosphatase
family protein contains similarity to inositol
polyphosphate 5-phosphatase I (GI:10444261) and II
(GI:10444263) [Arabidopsis thaliana]; contains Pfam
profile PF03372: Endonuclease/Exonuclease/phosphatase
family
Length = 437
Score = 33.5 bits (73), Expect = 0.091
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Frame = -2
Query: 237 VLILG-TEPGFSLLMSWQRTVPSLRTSSNSSPGGNLAPRTPSIHSWASFSFSGLRLEAIL 61
VL+LG EP W + S+SS GG L+P+TPS + + F F+ L+ I
Sbjct: 57 VLVLGDNEPA----AKWLAMINQSLNKSSSSSGGRLSPKTPSFGAGSMF-FAKPSLKKIS 111
Query: 60 A--RT*RSRDM-LCDCVSAFSE 4
RT R + +C+C S FSE
Sbjct: 112 ESFRTECRRKLKICNC-STFSE 132
>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893
Length = 687
Score = 33.1 bits (72), Expect = 0.12
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Frame = +2
Query: 149 ELFEDVLKDGTVLCQLINKLKPGSVPK--INTTG--GQFKMMENITNFQSAIKAYGVPDI 316
+L+E ++KDG +LC+LIN PG++ + INT ++ EN T ++ KA G +
Sbjct: 155 QLYE-LVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGCSVV 213
Query: 317 DVFQTVDLWE 346
++ T DL E
Sbjct: 214 NI-GTQDLAE 222
>At5g55400.1 68418.m06902 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 714
Score = 32.7 bits (71), Expect = 0.16
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Frame = +2
Query: 149 ELFEDVLKDGTVLCQLINKLKPGSVPK--INTTG--GQFKMMENITNFQSAIKAYGVPDI 316
+L+E ++KDG +LC+LIN PG++ + INT ++ EN T ++ KA G +
Sbjct: 156 DLYE-LVKDGVLLCKLINIAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGCSVV 214
Query: 317 DVFQTVDLWE 346
++ T DL E
Sbjct: 215 NI-GTQDLAE 223
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 29.9 bits (64), Expect = 1.1
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Frame = +2
Query: 53 VRAKIASKRNPEKEK---EAQEWIEGVLGAKF-----PPGELFEDVLKD--GTVLCQL-I 199
+R+ +ASKR E+ K EA EW+ G + ++F PGE+ V G Q+ +
Sbjct: 1043 LRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 1102
Query: 200 NKLKPGSVPKINTTGGQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVV 370
N V N T G ++ E I N IK P + V+ T + + K+ A+ V
Sbjct: 1103 NTFHYAGVSAKNVTLGVPRLRE-IINVAKRIK---TPSLSVYLTPEASKSKEGAKTV 1155
>At5g02790.1 68418.m00221 In2-1 protein, putative similar to In2-1,
Zea mays, EMBL:X58573
Length = 235
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 401 YRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKG 532
Y + GP L P+ D KR+F DE+LK T + S KG
Sbjct: 99 YLDNTFEGPSLYPE--DHAKREFGDELLKYTDTFVKTMYVSLKG 140
>At5g02780.1 68418.m00220 In2-1 protein, putative similar to In2-1
[Zea mays] EMBL:X58573
Length = 237
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 401 YRHAEWSGPCLGPKPADECKRDFSDEVLK-AGQTVIGLQAGSNKG 532
Y + + GP L P+ D KR+F +E+LK +T + GS KG
Sbjct: 101 YVDSNFDGPSLYPE--DSAKREFGEELLKYVDETFVKTVFGSFKG 143
>At3g12580.1 68416.m01567 heat shock protein 70, putative / HSP70,
putative strong similarity to heat shock protein
GI:425194 [Spinacia oleracea]
Length = 650
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +2
Query: 62 KIASKRNPEKEKEAQEWIEGVL----GAKFPPGELFEDVLKDGTVLCQ-LINKLKPGSVP 226
KIASK + +K+ ++ I+ + G + + FED +K+ LC +I ++ G+ P
Sbjct: 563 KIASKLDAADKKKIEDAIDQAIEWLDGNQLAEADEFEDKMKELESLCNPIIARMYQGAGP 622
Query: 227 KINTTGG 247
+ GG
Sbjct: 623 DMGGAGG 629
>At4g33650.1 68417.m04780 dynamin-like protein 2a (ADL2a) identical
to dynamin like protein 2a (ADL2a) [Arabidopsis
thaliana] GI:19032337; supported by cDNA gi:19032336
Length = 808
Score = 28.3 bits (60), Expect = 3.4
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Frame = -2
Query: 519 PACRPITVCPAFRTSSEKSRLHSSAGLGPR-------QGPLHSACL*VSRPRANSVLTTW 361
P RP RTSS S++ S + LG + QG + SA ++P AN+ T W
Sbjct: 551 PVARPKDTVEPDRTSSSTSQVKSRSFLGRQANGIVTDQGVV-SADAEKAQPAANASDTRW 609
Query: 360 AM-SFFSHRST--VWNTSMSGTPYA-LIADWKFVMFSIILNCPPVVL 232
+ S F T V S+ P++ + D + I L PP VL
Sbjct: 610 GIPSIFRGGDTRAVTKDSLLNKPFSEAVEDMSHNLSMIYLKEPPAVL 656
>At3g49210.1 68416.m05378 expressed protein
Length = 518
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = -2
Query: 357 MSFFSHRSTVWNTSMSGTPYALIADWKFVM--FSIILNCPPVVLILGTEPGFSLLMSWQR 184
+SF+ H T S+ G P+AL ++ M +I L P V+ ++P LL W++
Sbjct: 445 ISFYGHPITYMAPSVYGHPHALTMHFQSYMNQMTISLTVDPTVI---SDP-HRLLDDWEK 500
Query: 183 TVPSLRTS 160
++ S++ +
Sbjct: 501 SLQSIKAA 508
>At5g67270.1 68418.m08480 microtubule-associated EB1 family protein
similar to SP|Q9UPY8 Microtubule-associated protein
RP/EB family member 3 (Protein EB3) {Homo sapiens};
contains Pfam profiles PF00307: Calponin homology (CH)
domain, PF03271: EB1 protein
Length = 329
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Frame = +2
Query: 176 GTVLCQLINKLKPGSVP--KIN-TTGGQFKMMEN 268
G V CQL++ + PG+VP K+N +++M++N
Sbjct: 40 GAVHCQLMDSVHPGTVPMHKVNFDAKSEYEMIQN 73
>At5g14570.1 68418.m01708 transporter, putative similar to
trans-membrane nitrate transporter protein AtNRT2:1
[Arabidopsis thaliana] GI:3747058, high-affinity nitrate
transporter ACH1 [Arabidopsis thaliana] GI:3608362;
contains Pfam profile PF00083: Sugar (and other)
transporter
Length = 493
Score = 27.9 bits (59), Expect = 4.5
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Frame = +2
Query: 179 TVLCQLINKLKPGSVPKINTTGGQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDI 358
+V Q + L G VP ++T ++ IT + A V +F D+ +++ I
Sbjct: 375 SVFVQAASGLVFGVVPFVSTRS--LGVVAGITGSGGTVGAV-VTQFLLFSGDDVRKQRSI 431
Query: 359 AQV--VSTLFALGRETYRHAEWSGPCLGPKPADECKRDFSDEVL 484
+ + ++ +FAL + +W G C GP + E + D S +L
Sbjct: 432 SLMGLMTFVFALSVTSIYFPQWGGMCCGPSSSSE-EEDISRGLL 474
>At1g78210.1 68414.m09114 hydrolase, alpha/beta fold family protein
low similarity to hydrolases from Rhodococcus sp. EtbD2
GI:3273241, EtbD1 GI:3273239; contains Pfam profile
PF00561: hydrolase, alpha/beta fold family
Length = 314
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 167 LKDGTVLCQLINKLKPGSVPKIN 235
LKDGTV+ ++K KP S PK N
Sbjct: 31 LKDGTVVNFWVSKTKPESKPKPN 53
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,015,560
Number of Sequences: 28952
Number of extensions: 300837
Number of successful extensions: 970
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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