Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0082
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0315 + 22318155-22318210,22319743-22319769,22319868-223199... 30 1.1
08_02_0981 + 23266174-23266689,23268389-23268549,23269068-232693... 30 1.4
10_08_0618 + 19307658-19308584,19308690-19309082 28 5.6
02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-96... 28 5.6
11_01_0779 + 6518556-6518601,6519825-6519967,6520091-6520114,652... 27 7.5
01_06_1125 + 34683184-34684776 27 7.5
09_02_0362 + 7860088-7860197,7861606-7861636,7861738-7861801,786... 27 9.9
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 27 9.9
>11_06_0315 +
22318155-22318210,22319743-22319769,22319868-22319990,
22320867-22321110,22321487-22321981
Length = 314
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/67 (22%), Positives = 29/67 (43%)
Frame = +2
Query: 242 DEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPK 421
++ + D KELK +KD + K +D+ K + K V + + + + P
Sbjct: 227 EQKKALKDSKELKKALKDSKEQGSQKDSDELKPKSNKRVTFAEVEPEKELKASNSDWHPT 286
Query: 422 DEFKEIY 442
E+ +Y
Sbjct: 287 SEYHSVY 293
>08_02_0981 +
23266174-23266689,23268389-23268549,23269068-23269309,
23270180-23270284,23270746-23270902,23271860-23272028,
23272598-23272638,23273151-23273216,23273524-23273779
Length = 570
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 341 SARKIVKHIKQHEADYWEQMKAKYD-PKDEFKEIYEGFLAGQN*TCYKCLRWYNRI 505
S K +KHI ++ + + ++ KYD P D FK + + +A + +C C+ +I
Sbjct: 374 SIAKTMKHIASNQEAFNQSLRWKYDGPSDSFKALID--MAAVHSSCRLCIHVATKI 427
>10_08_0618 + 19307658-19308584,19308690-19309082
Length = 439
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 182 DVDEILENRKLLVPYIKCVLDEG-RCTPDGKELKAH 286
D DEI E+ +PY+K V+ EG R P G + AH
Sbjct: 321 DHDEITEDDTQKMPYLKAVILEGLRKHPPGHFVLAH 356
>02_01_0135 +
967172-967229,968316-968657,968936-969015,969063-969698,
969819-971527,971563-972514,972821-973273,974303-974497
Length = 1474
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +2
Query: 146 IAEKYTDKYDNIDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCT 325
+A + K DN + E L+ K L+ + V+DE D L+ HI+ G + A CT
Sbjct: 88 LAAAESSKIDNRPLSESLDELKELLYDAEDVMDE----LDYYRLQQHIEGGKGSTAASCT 143
Query: 326 DKQ 334
+ +
Sbjct: 144 NPE 146
>11_01_0779 +
6518556-6518601,6519825-6519967,6520091-6520114,
6520140-6520286,6521957-6522142,6522232-6522490,
6522738-6522969,6523081-6523231,6523322-6523499,
6523916-6524191,6524414-6524642,6524754-6524904,
6525013-6525192
Length = 733
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/87 (18%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +2
Query: 149 AEKYTDKYDNIDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKD-GMQTACAKCT 325
+ + T +Y +++ D+IL+ ++ + + CV + + P E+ + D G +
Sbjct: 404 SSQITSRYPSLEEDDILQAKRCIESGLNCVETDPKKRPTISEIIVKLTDKGTEVKQGVLP 463
Query: 326 DKQKVSARKIVKHIKQHEADYWEQMKA 406
+ + V+ +K++ + D Q +A
Sbjct: 464 NGELVAVKKLLDSVTAVNQDKQFQSEA 490
>01_06_1125 + 34683184-34684776
Length = 530
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/32 (34%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +2
Query: 371 QHEADYWEQMKAK-YDPKDEFKEIYEGFLAGQ 463
+ A Y+E+MKAK + P+ + +E+ + +L+G+
Sbjct: 475 EESAKYYEEMKAKGFPPEKKTEEMIQAWLSGR 506
>09_02_0362 +
7860088-7860197,7861606-7861636,7861738-7861801,
7861922-7862052,7863575-7863784,7863891-7863956,
7864868-7865075,7866270-7866325,7866406-7867128,
7868246-7868299,7868667-7868695,7869501-7869585,
7870032-7870202,7870246-7870827
Length = 839
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 353 IVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGFLAGQ 463
IV+H + +Q + + P ++ +I+EG L+GQ
Sbjct: 503 IVQHPNAQQQQQQQQQQQQQQPPPKYVKIWEGTLSGQ 539
>04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 27.1 bits (57), Expect = 9.9
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +2
Query: 221 PYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQM 400
P K L +G DG+ + I + + A + + K +I+K +K+ D +E+M
Sbjct: 1258 PTYKECLTKGVDPLDGEYIDWKIIEKFEEASPQIKKELK---EEILKELKKEMNDKFEEM 1314
Query: 401 KAKYDPKDE 427
K YD K E
Sbjct: 1315 KKAYDEKFE 1323
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,856,282
Number of Sequences: 37544
Number of extensions: 287350
Number of successful extensions: 651
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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