Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0080
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0711 + 22404710-22404824,22405726-22406288,22406386-224065... 28 3.0
09_02_0338 + 7426999-7428322,7428390-7428646 28 4.0
05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622 28 4.0
07_03_0905 + 22459687-22460071,22461766-22461888,22461986-224620... 27 5.3
05_03_0618 - 16262826-16263097,16263111-16263183 27 5.3
01_07_0172 + 41704905-41706170 27 5.3
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 27 7.0
09_04_0269 + 16265191-16265472,16265574-16266149 27 7.0
05_01_0046 + 320600-320631,320694-320733,320871-320957,321282-32... 27 9.2
03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461 27 9.2
>12_02_0711 +
22404710-22404824,22405726-22406288,22406386-22406547,
22406664-22407257
Length = 477
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 243 YGNLVAGSIVSQLTAAAMVAPTP*GDAKHHPFSTSLQIGPF 365
Y + +AG+ L A + AP GD + P + +I PF
Sbjct: 114 YFDYIAGTSTGGLITAMLAAPGAGGDGRRRPLFAAKEICPF 154
>09_02_0338 + 7426999-7428322,7428390-7428646
Length = 526
Score = 27.9 bits (59), Expect = 4.0
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -3
Query: 171 LMESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRRYKSYYVD 31
LM C L HR P L + L A L+AI KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443
>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
Length = 66
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Frame = +2
Query: 185 RFQLSGNSGRKHSRCCTSILRKFSGR------QHCVTVDCCC 292
R +G+K RCC S R+ + R + C+ CCC
Sbjct: 17 RLDSEQQAGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58
>07_03_0905 +
22459687-22460071,22461766-22461888,22461986-22462086,
22462229-22462301,22462771-22462848,22462995-22463065,
22463539-22463841,22464180-22464302,22464539-22464736
Length = 484
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 384 LIPNKTEKVRSGAMSRTGDV*HHLMAWGLPWQ 289
+I + E + G S TGD HLMA+G P Q
Sbjct: 439 IIDSDGEVIARGDGSHTGDEIEHLMAYGPPIQ 470
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 56 RIARREQKLKEHGASSCISGKRGRRC 133
R+ARR + LK + C G R RRC
Sbjct: 11 RMARRRRWLKRRRSGHCRCGLRSRRC 36
>01_07_0172 + 41704905-41706170
Length = 421
Score = 27.5 bits (58), Expect = 5.3
Identities = 8/27 (29%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = -1
Query: 380 FQIKQKRSDLERC-RERVMFSITSWRG 303
F++++++ + C ++R +FS+++WRG
Sbjct: 391 FKVREEKGNFFLCWQDRALFSVSAWRG 417
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 173 GSRARFQLSGNSGRKHSRCCTS 238
GSRA F+ NS +KHS+ C +
Sbjct: 865 GSRALFEGGFNSSQKHSKSCAA 886
>09_04_0269 + 16265191-16265472,16265574-16266149
Length = 285
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 168 MESTDPQCHILQHRRPRLPL 109
M T P C +L++ RPRLPL
Sbjct: 157 MARTGPLCLLLENPRPRLPL 176
>05_01_0046 +
320600-320631,320694-320733,320871-320957,321282-321378,
321532-321823,321850-321990,322285-322390
Length = 264
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = +2
Query: 62 ARREQKLKEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSR 226
A++ + E S G G + W+W D SGS + FQ S SR
Sbjct: 87 AQKWKNFDEDDCSDTPYGNFGGKRSFTWYWPGEDDESGSPSGFQWRDESQSNKSR 141
>03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461
Length = 353
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 62 ARREQKLKEHG-ASSCISGKRGRRCCNIWHWGSVDSISG 175
A RE + ++G A + G R N W G DS+SG
Sbjct: 44 ALRESSVSQNGMAPPEPTAHEGHRASNSWSSGDTDSVSG 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,058,105
Number of Sequences: 37544
Number of extensions: 211599
Number of successful extensions: 461
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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