Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0079
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0767 + 31823659-31823734,31823859-31823979,31824078-318241... 81 6e-16
06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250... 72 4e-13
03_05_0325 + 23135816-23135894,23136161-23136333,23136440-231366... 69 4e-12
07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,256... 34 0.097
03_05_0822 - 27963849-27964544,27965043-27965091,27965372-279654... 31 1.2
09_02_0070 - 3844270-3846228 29 3.6
03_01_0207 - 1633177-1633372,1633623-1633688,1633778-1633859,163... 29 3.6
04_01_0316 + 4251465-4251590,4251664-4251719,4252973-4253087,425... 29 4.8
11_01_0361 + 2772193-2772334,2773457-2773587,2773872-2773985,277... 28 6.4
06_03_1084 + 27483276-27483492,27483991-27484121,27484685-274847... 28 6.4
04_03_0282 - 13874547-13874738,13875047-13875134,13875222-138753... 28 8.4
>01_06_0767 +
31823659-31823734,31823859-31823979,31824078-31824189,
31824278-31824691,31824795-31824898,31825017-31825136,
31825344-31825467,31826567-31826680,31826789-31826980,
31827328-31827424,31827505-31827653,31828729-31829013
Length = 635
Score = 81.4 bits (192), Expect = 6e-16
Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 11/122 (9%)
Frame = +3
Query: 198 IIHIDLDCFYAQVEMVRNPELRDVPLGIQQKNI-----VVTSNYEARNYGVSKCMLVTDA 362
I H+D+DCFY QVE RNPELR P + Q N ++ +YEAR +GV + M +A
Sbjct: 14 IAHVDMDCFYVQVEQRRNPELRGQPTAVVQYNDWKGGGLIAVSYEARKFGVKRSMRGDEA 73
Query: 363 LKVCPNLKLV------NGEDLHSYRTASGKVFLVLQGWRCPVEKLGMDENFIDVTSLVEE 524
VCP++ LV + DL+ YR+A +V +L + E+ +DE ++D+T +E
Sbjct: 74 KMVCPSINLVQVPVARDKADLNVYRSAGSEVVTIL-STKGKCERASIDEVYLDLTDAAKE 132
Query: 525 KL 530
L
Sbjct: 133 ML 134
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 618 LKIASQIANEMRKKIYDELGYTTCAGIAHNK 710
L + I ++R K+ +E +T AGIAHNK
Sbjct: 211 LSCGAIIVAQLRVKVLEETQFTCSAGIAHNK 241
>06_03_1208 -
28422941-28423139,28423854-28424434,28424705-28425078,
28425235-28425339,28425902-28425970,28426084-28426156,
28426395-28426478,28426616-28426648,28426731-28426790,
28427535-28427627,28427851-28427970,28428804-28428886,
28428887-28429007,28429114-28429164,28429245-28429333,
28429429-28429561,28430220-28430354,28430581-28430952,
28431679-28431796,28431883-28431998,28432131-28432442
Length = 1106
Score = 72.1 bits (169), Expect = 4e-13
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Frame = +3
Query: 195 SIIHIDLDCFYAQVEMVRNPELRDVPLGIQQKN------IVVTSNYEARNYGVSKCMLVT 356
+IIHID+DCF+ V + PEL D P+ + + + ++NY ARNYG+ M V
Sbjct: 345 TIIHIDMDCFFVSVVIRNKPELHDKPVAVCHSDNPKGTAEISSANYPARNYGIKAGMFVR 404
Query: 357 DALKVCPNLKLVNGEDLHSYRTASGKVFLVLQGWRCPVEKLGMDENFIDVTSLVEE 524
+A CP+L +V D +Y + + + +L + V+ L DE F+D+T + +
Sbjct: 405 EAKARCPHLMIV-PYDFDAYGEVADQFYGILHKYCSKVQALSCDEAFLDMTECLHD 459
>03_05_0325 +
23135816-23135894,23136161-23136333,23136440-23136613,
23136881-23137004,23137090-23137190,23137337-23137423,
23137801-23137896,23138209-23138329,23138475-23138603,
23139458-23139549,23139660-23139771,23140189-23140541,
23140670-23140899,23141179-23141278,23143357-23143411,
23143548-23145496,23145587-23145745,23146514-23146685,
23146758-23147056,23147246-23147521
Length = 1626
Score = 68.9 bits (161), Expect = 4e-12
Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Frame = +3
Query: 201 IHIDLDCFYAQVEMVRNPELRDVPLGIQQKNIVVTSNYEARNYGVSKCMLVTDALKVCPN 380
+H D+D FYA VE++ NP L+ PL + +++ T++YEAR +GV M K+CP
Sbjct: 104 LHTDMDAFYATVEILENPSLKGKPLAVGSMSMIATASYEARKFGVRAAMPGFIGCKLCPE 163
Query: 381 LKLV--NGEDLHSYRTASGKVFLVLQGWRCPVEKLGMDENFIDVTSLVEEKLKNANLNDL 554
L V N E Y + KVF Q + +DE ++++T + ++
Sbjct: 164 LVFVRPNFERYTYYSELTRKVF---QRYDPNFVATSLDEAYLNITKVCFDRGITGEEVAT 220
Query: 555 IVMGQLYSEPSAECPCG-CHNRL--KIASQI 638
+ G ++ E C G NR+ K+ S I
Sbjct: 221 ELRGAIHQETGLTCSAGVAPNRMIAKVCSDI 251
>07_01_0353 +
2563807-2564496,2564595-2564660,2564853-2564918,
2565044-2565115,2565196-2565261,2565355-2565417,
2565505-2565570,2565963-2566062,2567403-2567504,
2567772-2567995,2568200-2568314,2568653-2568763,
2568873-2569088,2569426-2569624,2570690-2570790,
2570872-2570919,2571052-2571236,2571345-2571462,
2571572-2571699,2571981-2572107,2572529-2572647,
2572770-2572938,2573078-2573162,2573247-2573320,
2573449-2573568,2574068-2574251,2574343-2574464,
2574548-2574755,2574885-2574958,2575047-2575185,
2575275-2575456,2575852-2576007,2576153-2576284,
2576508-2576566,2576913-2576945,2577065-2577196,
2577303-2577479
Length = 1675
Score = 34.3 bits (75), Expect = 0.097
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Frame = +3
Query: 363 LKVCPNLKLVNGEDLHSYRTASGKVF------LVLQGWRCPVEKLGMDENFIDVTSLVEE 524
L V P LK N DL+ K + + GW +L D F S + E
Sbjct: 384 LLVGPTLKKFNDRDLNPGEAEVAKQYPAHTAICIRDGWEFCSPELAADSTF----SFLLE 439
Query: 525 KLKNANLNDLIVMGQLYSEPSAECPCGCH 611
+ KN DLIV P E PC CH
Sbjct: 440 QWKNKLPQDLIVKKAHVDHPFEEDPCHCH 468
>03_05_0822 -
27963849-27964544,27965043-27965091,27965372-27965480,
27965979-27966006,27966086-27966276,27966418-27966532,
27966955-27967206
Length = 479
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +3
Query: 546 NDLIVMGQLYSEP--SAECPCGCHNRLKIASQIANEMR--KKIYDE 671
+DL ++ +L EP S ECP HNRL A A+ + +KI DE
Sbjct: 63 DDLSILRELQGEPCVSQECPADLHNRLVAAVNNASFLAQLEKIRDE 108
>09_02_0070 - 3844270-3846228
Length = 652
Score = 29.1 bits (62), Expect = 3.6
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 2/114 (1%)
Frame = +3
Query: 183 EHFKSIIHIDLDCFYAQVEMVRNPELRDVPLG-IQQKNIVVTSNYEARNYGVSKCMLVTD 359
EH K +IH D+ C ++ NP L D L ++ N S A G L +
Sbjct: 446 EHDKQVIHRDIKCSNILLDSHFNPRLGDFGLARLKDPNTSPRSTLAAGTVG----YLAPE 501
Query: 360 ALKVCPNLKLVNGEDLHSYRTASGKVFLVLQGWRCPVEKLGMDE-NFIDVTSLV 518
L++ K D++SY G V L + R P+E D N ++V V
Sbjct: 502 YLQMG---KATEKSDVYSY----GVVLLEICTGRRPIESAAPDSMNMVNVVDWV 548
>03_01_0207 -
1633177-1633372,1633623-1633688,1633778-1633859,
1633942-1634037,1634413-1634518,1634602-1634661,
1635114-1635234,1635929-1636040,1636118-1636217,
1636328-1636382,1636489-1636595,1636798-1636850,
1636989-1637114,1637909-1638065,1638226-1638421,
1638917-1639073,1639139-1639379,1639475-1639605,
1639704-1639826,1639929-1639984,1640610-1640767,
1640847-1640984,1641070-1641123
Length = 896
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Frame = +3
Query: 150 SSCSTCNEID---GEHFKSIIHIDLDCFYAQVEMVRNPELRDVPL------GIQQKNIVV 302
+SCSTC ++ +I+ +D + Q++++ NP + DV L ++ KN+ V
Sbjct: 34 ASCSTCGAVEHPLSADAAAILVVDTNVVLHQIDLLENPAIDDVVLLSVVLDEVKNKNLAV 93
Query: 303 TSNYEA 320
+ +A
Sbjct: 94 FNRIKA 99
>04_01_0316 +
4251465-4251590,4251664-4251719,4252973-4253087,
4253174-4253417,4254189-4254325,4255006-4255065,
4255336-4255460,4256021-4256048,4256267-4256336,
4256513-4256565,4256966-4257025,4257498-4257544,
4257617-4257741,4258572-4258686,4258778-4258826,
4260415-4260471,4261126-4261209,4261363-4261442,
4262005-4262094,4262252-4262375
Length = 614
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +3
Query: 78 IYKLKKAKLITAFNDTNMDDR 140
IY+ +A+L+T+FND+ +DR
Sbjct: 103 IYRFSQARLLTSFNDSGNNDR 123
>11_01_0361 +
2772193-2772334,2773457-2773587,2773872-2773985,
2774303-2774459,2774577-2775000,2775238-2776030,
2776182-2776241,2776952-2777593
Length = 820
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 538 AFFNFSSTRLVTSMKFSSIPSFSTGHRQPCNTKNTLPDAVL*LCK 404
AF + + R+ +S + PSF H+QP KN VL C+
Sbjct: 320 AFSRYGNKRIESSAQRPFPPSFRVVHQQPVYDKNPQSSRVLLSCE 364
>06_03_1084 +
27483276-27483492,27483991-27484121,27484685-27484740,
27484834-27484891,27484970-27485113,27485270-27485353,
27485434-27485514,27485776-27485889,27486196-27486281,
27486376-27486436,27487343-27487525,27487987-27488038,
27488080-27488135,27488197-27488258,27488498-27488581,
27488899-27489030,27490220-27490316
Length = 565
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/70 (24%), Positives = 26/70 (37%)
Frame = +3
Query: 489 ENFIDVTSLVEEKLKNANLNDLIVMGQLYSEPSAECPCGCHNRLKIASQIANEMRKKIYD 668
E I +L + N ++ IV+ Y C K SQ+ E+ K +
Sbjct: 209 ERMISPETLRRNSVMQRNWSNKIVIAFTYRRDGVLVGCKYREVSKKFSQVEGEIDKLSME 268
Query: 669 ELGYTTCAGI 698
E GY C +
Sbjct: 269 EAGYRNCVSV 278
>04_03_0282 -
13874547-13874738,13875047-13875134,13875222-13875328,
13875487-13875542,13875853-13875882,13877397-13877505,
13877774-13878318,13879584-13879668,13879753-13879914,
13880293-13880434,13880524-13880624,13882307-13882489
Length = 599
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -2
Query: 523 SSTRLVTSMKFSSIPSFSTGHRQPCNTK---NTLPDAVL*LCKSSPFTSFKFGQTLSASV 353
S T LVT++ F++ +GH C T N L DA+ K + F +F +++ +V
Sbjct: 464 SRTVLVTNVHFAATKEALSGHFMKCGTVLKINILTDAISGHPKGAAFVTFTDKESVEKAV 523
Query: 352 T 350
+
Sbjct: 524 S 524
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,230,250
Number of Sequences: 37544
Number of extensions: 361112
Number of successful extensions: 928
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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