Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0079
(710 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41938| Best HMM Match : No HMM Matches (HMM E-Value=.) 175 2e-44
SB_46308| Best HMM Match : IMS (HMM E-Value=0) 78 8e-15
SB_3195| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 1e-13
SB_17357| Best HMM Match : IMS (HMM E-Value=0) 47 2e-05
SB_15048| Best HMM Match : IMS (HMM E-Value=0) 33 0.17
SB_52460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_21960| Best HMM Match : rve (HMM E-Value=4e-23) 29 3.7
SB_7045| Best HMM Match : rve (HMM E-Value=3.8e-22) 29 3.7
SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_53136| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 29 4.9
SB_47014| Best HMM Match : rve (HMM E-Value=6.8e-21) 29 4.9
SB_41742| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_28715| Best HMM Match : rve (HMM E-Value=5.4e-26) 29 4.9
SB_18201| Best HMM Match : rve (HMM E-Value=3.6e-21) 29 4.9
SB_13721| Best HMM Match : C1_1 (HMM E-Value=1.1) 29 4.9
SB_4788| Best HMM Match : rve (HMM E-Value=0) 29 4.9
SB_144| Best HMM Match : rve (HMM E-Value=3.6e-21) 29 4.9
SB_58785| Best HMM Match : RnaseH (HMM E-Value=0.37) 29 4.9
SB_39524| Best HMM Match : rve (HMM E-Value=9.1e-17) 29 4.9
SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 29 4.9
SB_28694| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 29 4.9
SB_22848| Best HMM Match : RVT_1 (HMM E-Value=5.1e-15) 29 4.9
SB_21794| Best HMM Match : rve (HMM E-Value=5.4e-26) 29 4.9
SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_5227| Best HMM Match : RnaseH (HMM E-Value=1.8) 29 4.9
SB_2983| Best HMM Match : RnaseH (HMM E-Value=1.6) 29 4.9
SB_43181| Best HMM Match : rve (HMM E-Value=1e-25) 28 8.6
SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_41938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 175 bits (427), Expect = 2e-44
Identities = 82/165 (49%), Positives = 116/165 (70%), Gaps = 6/165 (3%)
Frame = +3
Query: 234 VEMVRNPELRDVPLGIQQKNIVVTSNYEARNYGVSKCMLVTDALKVCPNLKLVNGEDLHS 413
VEM+RNP LRD P+G+ QK+I+VT NY AR G+ K + + +A K CP+L ++NGEDL
Sbjct: 271 VEMIRNPCLRDRPVGVSQKHILVTCNYVARAMGLKKLISLAEAKKKCPDLVIINGEDLTK 330
Query: 414 YRTASGKVFLVLQGWRCPVEKLGMDENFIDVTSLVEEKLKNANLNDLIVMGQLYSE---- 581
YR S +V +L+ + VE+LG+DEN++DV+ LV+E++K+A I +G +Y +
Sbjct: 331 YREFSSRVTKLLRRFALRVERLGLDENYVDVSELVQERMKHAPRGSYIAVGCIYGDNILK 390
Query: 582 --PSAECPCGCHNRLKIASQIANEMRKKIYDELGYTTCAGIAHNK 710
+ CPCGCH RL + S IA+E+RK I+DE+G TTCAGIAHNK
Sbjct: 391 GSSNEVCPCGCHERLTVGSVIASELRKAIFDEIGLTTCAGIAHNK 435
>SB_46308| Best HMM Match : IMS (HMM E-Value=0)
Length = 1245
Score = 77.8 bits (183), Expect = 8e-15
Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 2/154 (1%)
Frame = +3
Query: 192 KSIIHIDLDCFYAQVEMVRNPELRDVPLGIQQKNIVVTSNYEARNYGVSKCMLVTDALKV 371
++I+H+D+D FYA VEM +P L+D P+ + +++ TSNY AR YGV M A K+
Sbjct: 652 RTIVHVDMDAFYAAVEMRDDPSLKDKPMAVGSTSMLSTSNYPARRYGVRAAMPGFIAKKL 711
Query: 372 CPNLKLVNGEDLH--SYRTASGKVFLVLQGWRCPVEKLGMDENFIDVTSLVEEKLKNANL 545
CP+L +V LH YR S V + + + + +DE ++D+T + E+ +
Sbjct: 712 CPHLIIV---PLHFDKYRAVSKIVRGIFREYDPRFVPMSLDEAYLDLTDYLIERQRKTEK 768
Query: 546 NDLIVMGQLYSEPSAECPCGCHNRLKIASQIANE 647
+ PSA P + S A E
Sbjct: 769 RLFYKKVYRQTSPSAGVPSESESSEACGSNTAQE 802
>SB_3195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 73.7 bits (173), Expect = 1e-13
Identities = 59/200 (29%), Positives = 98/200 (49%), Gaps = 32/200 (16%)
Frame = +3
Query: 207 IDLDCFYAQVEMVRNPELRDVPLGIQQKNI-----VVTSNYEARNYGVSKCMLVTDALKV 371
+D+DCFY QVE R PEL+ P + Q N ++ +YEAR GV++ M +A +
Sbjct: 11 VDMDCFYVQVEQRRCPELKGKPCAVVQYNAWKGGGIIAVSYEARACGVTRNMRGDEAKQK 70
Query: 372 CPNLKLV-----NGE-DLHSYRTASGKVFLVLQGWRCPVEKLGMDENFIDVTSLVEEKLK 533
CP++ LV G+ +L YR A +V VL + E+ +DE ++D+T+ ++KL
Sbjct: 71 CPDIALVQVPVLRGKANLAHYRDAGAEVLEVLTTYCDNCERASVDEAYLDLTNSAQKKLS 130
Query: 534 --------------------NANLNDLIVMGQLYSEPSAECPCGCHNR-LKIASQIANEM 650
++ +D + +L E ++ + R L + IA EM
Sbjct: 131 VMTVPEIAEEVWRTTAIEGLSSKGSDTTISDELQKEWLSQLEASPYLRNLAAGAVIAAEM 190
Query: 651 RKKIYDELGYTTCAGIAHNK 710
R + ++ G+T AG+A NK
Sbjct: 191 RHAVLEKTGFTCSAGVATNK 210
>SB_17357| Best HMM Match : IMS (HMM E-Value=0)
Length = 990
Score = 46.8 bits (106), Expect = 2e-05
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 25/135 (18%)
Frame = +3
Query: 180 GEHFKSIIHIDLDCFYAQVEMVRNPELRDVPLGI--------QQKNIVVTS--------- 308
G + + I+HID+DCF+ V + +PEL P+ + Q VTS
Sbjct: 211 GVYGRVIMHIDMDCFFVSVYVRDHPELDGKPVAVCHAGKSGDQVTTSKVTSPDKSSAFFN 270
Query: 309 --------NYEARNYGVSKCMLVTDALKVCPNLKLVNGEDLHSYRTASGKVFLVLQGWRC 464
+Y AR GV M + A K+CP++ V YR S +++ +L +
Sbjct: 271 SMSEIASCSYAARECGVRNGMFLGQARKLCPDITCVPYL-FDKYRQVSQRLYEILVSYSH 329
Query: 465 PVEKLGMDENFIDVT 509
+E + DE F+DVT
Sbjct: 330 DIEAVSCDEAFLDVT 344
>SB_15048| Best HMM Match : IMS (HMM E-Value=0)
Length = 660
Score = 33.5 bits (73), Expect = 0.17
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 6/153 (3%)
Frame = +3
Query: 207 IDLDCFYAQVEMVRNPELRDVPLGIQQKN--IVVTSNYEARNYGV---SKCMLVTDALKV 371
ID + FYA E V P+ P+ + N +++ + EA+ G+ + D LK
Sbjct: 5 IDCNNFYASCERVFQPQYNGKPIVVLSNNDGCIISRSDEAKKLGIPMGAPEFKCRDLLK- 63
Query: 372 CPNLKLVNGEDLHSYRTASGKVFLVLQGWRCP-VEKLGMDENFIDVTSLVEEKLKNANLN 548
+ +V + Y S +V +L+ + CP VE +DE F+D + + + +
Sbjct: 64 -QHKVIVFSSNYPLYGDLSQRVMKILESY-CPSVEIYSIDEAFLDCNGMPIDNFNDYGIQ 121
Query: 549 DLIVMGQLYSEPSAECPCGCHNRLKIASQIANE 647
+ + S P++ KIA++IA +
Sbjct: 122 IKKTIQKWISIPTSIGFAPSKALSKIANKIARK 154
>SB_52460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 147 ESSCSTCNEIDGEHFKSIIHIDLDCFYAQVEMVRNPELRDVPLGIQQKNIVVT 305
++ S C E+ GEH+ ++ +DL Y +E+V+ P++ L Q K I T
Sbjct: 21 QAVASDCLEVQGEHY--LVLVDLYSDY--IELVKLPDMSSKTLIQQMKPIFAT 69
>SB_21960| Best HMM Match : rve (HMM E-Value=4e-23)
Length = 1109
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 147 ESSCSTCNEIDGEHFKSIIHIDLDCFYAQVEMVRNPELRDVPLGIQQKNIVVT 305
++ S C E+ GEH+ ++ D F +E+V+ P++ L Q K I T
Sbjct: 788 QAVASDCLEVQGEHYLVLV----DLFSDYIELVQLPDISSKTLIQQMKPIFAT 836
>SB_7045| Best HMM Match : rve (HMM E-Value=3.8e-22)
Length = 1213
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 147 ESSCSTCNEIDGEHFKSIIHIDLDCFYAQVEMVRNPELRDVPLGIQQKNIVVT 305
++ S C E+ GEH+ ++ D F +E+V+ P++ L Q K I T
Sbjct: 892 QAVASDCLEVQGEHYLVLV----DLFSDYIELVQLPDISSKTLIQQMKPIFAT 940
>SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1386
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 387 LVNGEDLHSYRTASGKVFLVLQGWRCPVEKLGMDENFIDVTSLVEEKLKNANLNDLIVMG 566
L+N E+ GKV + L+ +C + DEN ID T+ L N +V G
Sbjct: 174 LINREEAAVVEETRGKVSITLKCKQCGGQTCVSDENTIDGTARERAYLCNFLAIVFLVCG 233
Query: 567 QLYSE 581
Q + +
Sbjct: 234 QYFKD 238
>SB_53136| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 934
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 378 NLKLVNGEDLHSYRTASGKVFLVLQGWRCPVEKLGMD-ENFIDVTSLVEEKLKNANLNDL 554
N+K G+DL+ T S + W C E +D +++ V ++LKNA ++D
Sbjct: 779 NVKYKKGKDLYLADTLSRAYLPEVNAWECTRELEEIDHRSWMPVREETWQQLKNAAVDDA 838
Query: 555 I 557
+
Sbjct: 839 V 839
>SB_47014| Best HMM Match : rve (HMM E-Value=6.8e-21)
Length = 752
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 147 ESSCSTCNEIDGEHFKSIIHIDLDCFYAQVEMVRNPELRDVPLGIQQKNIVVT 305
++ S C E+ GEH+ ++ +DL Y +E+V+ P++ L Q K I T
Sbjct: 576 QAVASDCLEVQGEHY--LVLVDLYSDY--IELVQLPDMSSKTLIQQMKPIFAT 624
>SB_41742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1061
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 378 NLKLVNGEDLHSYRTASGKVFLVLQGWRCPVEKLGMD-ENFIDVTSLVEEKLKNANLNDL 554
N+K G+DL+ T S + W C E +D +++ V ++LKNA ++D
Sbjct: 847 NVKYKKGKDLYLADTLSRAYLPEVNAWECTRELEEIDHRSWMPVREETWQQLKNAAVDDA 906
Query: 555 I 557
+
Sbjct: 907 V 907
>SB_28715| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 359
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 378 NLKLVNGEDLHSYRTASGKVFLVLQGWRCPVEKLGMD-ENFIDVTSLVEEKLKNANLNDL 554
N+K G+DL+ T S + W C E +D +++ V ++LKNA ++D
Sbjct: 11 NVKYKKGKDLYLADTLSRAYLPEVNAWECTRELEEIDHRSWMPVREETWQQLKNAAVDDA 70
Query: 555 I 557
+
Sbjct: 71 V 71
>SB_18201| Best HMM Match : rve (HMM E-Value=3.6e-21)
Length = 322
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 147 ESSCSTCNEIDGEHFKSIIHIDLDCFYAQVEMVRNPELRDVPLGIQQKNIVVT 305
++ S C E+ GEH+ ++ +DL Y +E+V+ P++ L Q K I T
Sbjct: 89 QAVASDCLEVQGEHY--LVLVDLYSDY--IELVQLPDMSSKTLIQQMKPIFAT 137
>SB_13721| Best HMM Match : C1_1 (HMM E-Value=1.1)
Length = 256
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 387 LVNGEDLHSYRTASGKVFLVLQGWRCPVEKLGMDENFIDVTSLVEEKLKNANLNDLIVMG 566
L+N E+ GKV + L+ +C + DEN ID T+ L N +V G
Sbjct: 174 LINREEAAVVEETRGKVSITLKCKQCGGQTCVSDENTIDGTARERAYLCNFLAIVFLVCG 233
Query: 567 QLYSE 581
Q + +
Sbjct: 234 QYFKD 238
>SB_4788| Best HMM Match : rve (HMM E-Value=0)
Length = 1125
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 378 NLKLVNGEDLHSYRTASGKVFLVLQGWRCPVEKLGMD-ENFIDVTSLVEEKLKNANLNDL 554
N+K G+DL+ T S + W C E +D +++ V ++LKNA ++D
Sbjct: 104 NVKYKKGKDLYLADTLSRTYLPEVNAWECTRELEEIDHRSWMPVREETWQQLKNAAVDDA 163
Query: 555 I 557
+
Sbjct: 164 V 164
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 378 NLKLVNGEDLHSYRTASGKVFLVLQGWRCPVEKLGMD-ENFIDVTSLVEEKLKNANLNDL 554
N+K G+DL+ T S + W C E +D +++ V ++LKNA ++D
Sbjct: 654 NVKYKKGKDLYLADTLSRTYLPEVNAWECTRELEEIDHRSWMPVREETWQQLKNAAVDDA 713
Query: 555 I 557
+
Sbjct: 714 V 714
>SB_144| Best HMM Match : rve (HMM E-Value=3.6e-21)
Length = 887
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 147 ESSCSTCNEIDGEHFKSIIHIDLDCFYAQVEMVRNPELRDVPLGIQQKNIVVT 305
++ S C E+ GEH+ ++ +DL Y +E+V+ P++ L Q K I T
Sbjct: 654 QAVASDCLEVQGEHY--LVLVDLYSDY--IELVQLPDMSSKTLIQQMKPIFAT 702
>SB_58785| Best HMM Match : RnaseH (HMM E-Value=0.37)
Length = 279
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 378 NLKLVNGEDLHSYRTASGKVFLVLQGWRCPVEKLGMD-ENFIDVTSLVEEKLKNANLNDL 554
N+K G+DL+ T S + W C E +D +++ V ++LKNA ++D
Sbjct: 208 NVKYKKGKDLYLADTLSRAYLPEVNAWECTRELEEIDHRSWMPVREETWQQLKNAAVDDA 267
Query: 555 I 557
+
Sbjct: 268 V 268
>SB_39524| Best HMM Match : rve (HMM E-Value=9.1e-17)
Length = 754
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 147 ESSCSTCNEIDGEHFKSIIHIDLDCFYAQVEMVRNPELRDVPLGIQQKNIVVT 305
++ S C E+ GEH+ ++ +DL Y +E+V+ P++ L Q K I T
Sbjct: 623 QAVASDCLEVQGEHY--LVLVDLYSDY--IELVQLPDISSKTLIQQMKPIFAT 671
>SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 922
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 378 NLKLVNGEDLHSYRTASGKVFLVLQGWRCPVEKLGMD-ENFIDVTSLVEEKLKNANLNDL 554
N+K G+DL+ T S + W C E +D +++ V ++LKNA ++D
Sbjct: 851 NVKYKKGKDLYLADTLSRAYLPEVNAWECTRELEEIDHRSWMPVREETWQQLKNAAVDDA 910
Query: 555 I 557
+
Sbjct: 911 V 911
>SB_28694| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 1045
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 378 NLKLVNGEDLHSYRTASGKVFLVLQGWRCPVEKLGMD-ENFIDVTSLVEEKLKNANLNDL 554
N+K G+DL+ T S + W C E +D +++ V ++LKNA ++D
Sbjct: 812 NVKYKKGKDLYLADTLSRAYLPEVNAWECTRELEEIDHRSWMPVREETWQQLKNAAVDDA 871
Query: 555 I 557
+
Sbjct: 872 V 872
>SB_22848| Best HMM Match : RVT_1 (HMM E-Value=5.1e-15)
Length = 630
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 378 NLKLVNGEDLHSYRTASGKVFLVLQGWRCPVEKLGMD-ENFIDVTSLVEEKLKNANLNDL 554
N+K G+DL+ T S + W C E +D +++ V ++LKNA ++D
Sbjct: 270 NVKYKKGKDLYLADTLSRAYLPEVNAWECTRELEEIDHRSWMPVREETWQQLKNAAVDDA 329
Query: 555 I 557
+
Sbjct: 330 V 330
>SB_21794| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 383
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 378 NLKLVNGEDLHSYRTASGKVFLVLQGWRCPVEKLGMD-ENFIDVTSLVEEKLKNANLNDL 554
N+K G+DL+ T S + W C E +D +++ V ++LKNA ++D
Sbjct: 11 NVKYKKGKDLYLADTLSRAYLPEVNAWECTRELEEIDHRSWMPVREETWQQLKNAAVDDA 70
Query: 555 I 557
+
Sbjct: 71 V 71
>SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 378 NLKLVNGEDLHSYRTASGKVFLVLQGWRCPVEKLGMD-ENFIDVTSLVEEKLKNANLNDL 554
N+K G+DL+ T S + W C E +D +++ V ++LKNA ++D
Sbjct: 208 NVKYKKGKDLYLADTLSRAYLPEVNAWECTRELEEIDHRSWMPVREETWQQLKNAAVDDA 267
Query: 555 I 557
+
Sbjct: 268 V 268
>SB_5227| Best HMM Match : RnaseH (HMM E-Value=1.8)
Length = 334
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 378 NLKLVNGEDLHSYRTASGKVFLVLQGWRCPVEKLGMD-ENFIDVTSLVEEKLKNANLNDL 554
N+K G+DL+ T S + W C E +D +++ V ++LKNA ++D
Sbjct: 208 NVKYKKGKDLYLADTLSRAYLPEVNAWECTRELEEIDHRSWMPVREETWQQLKNAAVDDA 267
Query: 555 I 557
+
Sbjct: 268 V 268
>SB_2983| Best HMM Match : RnaseH (HMM E-Value=1.6)
Length = 279
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 378 NLKLVNGEDLHSYRTASGKVFLVLQGWRCPVEKLGMD-ENFIDVTSLVEEKLKNANLNDL 554
N+K G+DL+ T S + W C E +D +++ V ++LKNA ++D
Sbjct: 208 NVKYKKGKDLYLADTLSRAYLPEVNAWECTRELEEIDHRSWMPVREETWQQLKNAAVDDA 267
Query: 555 I 557
+
Sbjct: 268 V 268
>SB_43181| Best HMM Match : rve (HMM E-Value=1e-25)
Length = 341
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 378 NLKLVNGEDLHSYRTASGKVFLVLQGWRCPVEKLGMD-ENFIDVTSLVEEKLKNANLNDL 554
N+K G+DL+ T S + W C E +D +++ V ++LKNA ++D
Sbjct: 11 NVKYKKGKDLYLADTLSRAYLPEVNTWECTRELEEIDHRSWMPVREETWQQLKNAAVDDA 70
Query: 555 I 557
+
Sbjct: 71 V 71
>SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 378 NLKLVNGEDLHSYRTASGKVFLVLQGWRCPVEKLGMD-ENFIDVTSLVEEKLKNANLND 551
N+K G+DL+ T S + W C E +D +++ V ++LKNA ++D
Sbjct: 805 NVKYKKGKDLYLADTLSRAYLPEVNAWECTRELEEIDHRSWMPVREETWQQLKNAAVDD 863
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,820,211
Number of Sequences: 59808
Number of extensions: 446169
Number of successful extensions: 1285
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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