Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0079
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-5|AAB70988.5|  584|Caenorhabditis elegans Polh (dna pol...    74   1e-13
AB244413-1|BAE72703.1|  584|Caenorhabditis elegans DNA polymeras...    74   1e-13
L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna polym...    69   3e-12
Z46812-2|CAA86844.1| 1027|Caenorhabditis elegans Hypothetical pr...    63   2e-10
Z92786-9|CAB07204.2|  687|Caenorhabditis elegans Hypothetical pr...    31   0.61 
AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical ...    29   4.3  
Z67990-7|CAA91938.1|  406|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AL032653-3|CAA21713.1|  861|Caenorhabditis elegans Hypothetical ...    28   7.6  

>AF025460-5|AAB70988.5|  584|Caenorhabditis elegans Polh (dna
           polymerase eta) homologprotein 1 protein.
          Length = 584

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 16/131 (12%)
 Frame = +3

Query: 207 IDLDCFYAQVEMVRNPELRDVPLGIQQ------KNIVVTSNYEARNYGVSKCMLVTDALK 368
           ID+DCFYAQVE   NP L   P+ + Q      +  ++  +YEAR +GV + M V +A  
Sbjct: 8   IDMDCFYAQVEQRDNPSLWGQPVIVVQHSRQGIEGGILAVSYEARPFGVKRGMTVAEAKL 67

Query: 369 VCPNLKL--------VNGEDLHSYRTASGKVFLVLQGW--RCPVEKLGMDENFIDVTSLV 518
            CP + +        V+  D+  YR AS +VF VL  +  +  +EK  +DE F+D+++  
Sbjct: 68  KCPQISICHVPIGEYVDKADIQKYRDASAEVFRVLNNYDSQIIIEKASVDEAFLDLSAYT 127

Query: 519 EEKLKNANLND 551
            +KL+    N+
Sbjct: 128 NQKLQELRENE 138


>AB244413-1|BAE72703.1|  584|Caenorhabditis elegans DNA polymerase
           eta protein.
          Length = 584

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 16/131 (12%)
 Frame = +3

Query: 207 IDLDCFYAQVEMVRNPELRDVPLGIQQ------KNIVVTSNYEARNYGVSKCMLVTDALK 368
           ID+DCFYAQVE   NP L   P+ + Q      +  ++  +YEAR +GV + M V +A  
Sbjct: 8   IDMDCFYAQVEQRDNPSLWGQPVIVVQHSRQGIEGGILAVSYEARPFGVKRGMTVAEAKL 67

Query: 369 VCPNLKL--------VNGEDLHSYRTASGKVFLVLQGW--RCPVEKLGMDENFIDVTSLV 518
            CP + +        V+  D+  YR AS +VF VL  +  +  +EK  +DE F+D+++  
Sbjct: 68  KCPQISICHVPIGEYVDKADIQKYRDASAEVFRVLNNYDSQIIIEKASVDEAFLDLSAYT 127

Query: 519 EEKLKNANLND 551
            +KL+    N+
Sbjct: 128 NQKLQELRENE 138


>L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna
           polymerase kappa) homologprotein 1 protein.
          Length = 518

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 43/142 (30%), Positives = 69/142 (48%)
 Frame = +3

Query: 93  KAKLITAFNDTNMDDRNMESSCSTCNEIDGEHFKSIIHIDLDCFYAQVEMVRNPELRDVP 272
           K +L TA  +       +  +     E   +  +  + ID+D ++A VEM  NP LR VP
Sbjct: 50  KNRLQTATREERQKSEILMENLEMKLESSRDLSRDCVCIDMDAYFAAVEMRDNPALRTVP 109

Query: 273 LGIQQKNIVVTSNYEARNYGVSKCMLVTDALKVCPNLKLVNGEDLHSYRTASGKVFLVLQ 452
           + +    ++ TSNY AR +GV   M    + K+CP+L +V G +   Y   S +   +  
Sbjct: 110 MAVGSSAMLSTSNYLARRFGVRAGMPGFISNKLCPSLTIVPG-NYPKYTKVSRQFSQIFM 168

Query: 453 GWRCPVEKLGMDENFIDVTSLV 518
            +   V  + +DE FID+T  V
Sbjct: 169 EYDSDVGMMSLDEAFIDLTDYV 190


>Z46812-2|CAA86844.1| 1027|Caenorhabditis elegans Hypothetical
           protein ZK675.2 protein.
          Length = 1027

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 8/150 (5%)
 Frame = +3

Query: 99  KLITAFNDTNMDDRNMESSCSTCNEIDGEHFKSIIHIDLDCFYAQVEMVRNPELRDVPLG 278
           KL     +   +++ +    S  NEI  E   ++ H+DLDCF+  V +    +L+   + 
Sbjct: 409 KLEGKLTEKCFEEKELIDMKSLSNEISRE--STVFHVDLDCFFVSVAVRNRIDLKHKEVA 466

Query: 279 IQQK--------NIVVTSNYEARNYGVSKCMLVTDALKVCPNLKLVNGEDLHSYRTASGK 434
           I           + V + +Y AR+ GV   MLV DAL+ CP L L+  +    Y   S K
Sbjct: 467 ITHSKGTISNSMSEVASCSYAARDCGVKNGMLVRDALQKCPQLTLLPYQ-FEDYVQVSRK 525

Query: 435 VFLVLQGWRCPVEKLGMDENFIDVTSLVEE 524
           ++ +L  +   V  +  DE +I+++S  E+
Sbjct: 526 IYEILASYTLEVRAVSCDEMYINMSSFCEK 555


>Z92786-9|CAB07204.2|  687|Caenorhabditis elegans Hypothetical
           protein F47H4.2 protein.
          Length = 687

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 297 VVTSNYEARNYGVSKCMLVT--DALKVCPNLKLVNGEDLHSYRTASGKVFLVLQGWRCPV 470
           ++ +NY+A    + KC +VT     KVC  L+  +  D   +   + ++ +V+ G  C +
Sbjct: 347 LIPTNYQAMKRIIEKCSVVTILSIRKVCKGLR--SFVDTRCFEFPNKQLSIVIDGGNCYL 404

Query: 471 EKLGMDENFI 500
           + +  DEN +
Sbjct: 405 KIVTPDENML 414


>AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical
           protein C10E2.2 protein.
          Length = 501

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 471 EKLGMDENFIDVTSLVEEKLKNANLNDLIVMGQLYS 578
           EKLG+  N +DV ++ E  LK+ N+ ++   G LY+
Sbjct: 236 EKLGLKVN-VDVLNVSESSLKSENIREIQKGGTLYT 270


>Z67990-7|CAA91938.1|  406|Caenorhabditis elegans Hypothetical
           protein F02D10.7 protein.
          Length = 406

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -3

Query: 168 YKWNSSIPCFC 136
           YKWNSS  CFC
Sbjct: 381 YKWNSSFKCFC 391


>AL032653-3|CAA21713.1|  861|Caenorhabditis elegans Hypothetical
           protein Y54E5B.2 protein.
          Length = 861

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -1

Query: 404 IFTIYKFQIWTNLKCVSNEHTFTNSVVPCLVITRHYNVLLLDT 276
           I  +Y F    N++C+        S++P ++   H N+L++ T
Sbjct: 360 IIHVYNFADVENIRCLKRFRAQNASMIPAVISVVHDNLLVIGT 402


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,472,659
Number of Sequences: 27780
Number of extensions: 349794
Number of successful extensions: 1175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)