Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0079
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 448 CKVGGVPLKNLEWMK 492
           C V G P+K + W+K
Sbjct: 329 CNVRGNPIKTVSWLK 343


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 448 CKVGGVPLKNLEWMK 492
           C V G PL  ++W+K
Sbjct: 423 CHVAGEPLPRVQWLK 437


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/45 (26%), Positives = 17/45 (37%)
 Frame = -1

Query: 392 YKFQIWTNLKCVSNEHTFTNSVVPCLVITRHYNVLLLDTERYITE 258
           Y  +  T L C+ + H +      C V    Y   +LD   Y  E
Sbjct: 151 YGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVLDVVMYWKE 195


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 96  AKLITAFNDTNMDDRNMESSCSTCNEIDGEHFKSIIHIDL 215
           A L  A  D+NM   N     ST    D EH   + H DL
Sbjct: 615 ANLQAALGDSNMGFLNNSMCTSTTTSPDKEHV--LAHNDL 652


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +3

Query: 471 EKLGMDENFIDVTSLVEEKLKNANLNDLIVMGQLYSEPSAECPC 602
           E L  DE+F+DVT   + +   A+   L      + E     PC
Sbjct: 23  ENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFRELLKSTPC 66


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 11  DCPMLVSLFCKFDERKQL 64
           DC  +V LF  F +RK L
Sbjct: 424 DCDFVVKLFKTFKDRKYL 441


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
 Frame = +1

Query: 232 KWKWCETPNSVMYRSVSNRRTL-**RVI-TRQGTTELV----NVCSLLTHLRFVQI*NL* 393
           ++KW E PNSV    VSN  +L   +V+  RQ   E+     N   L   ++FV+     
Sbjct: 167 RYKWNEGPNSV---GVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYY 223

Query: 394 MVKIYIVTEL 423
           +++IYI + L
Sbjct: 224 LIQIYIPSGL 233


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
 Frame = +1

Query: 232 KWKWCETPNSVMYRSVSNRRTL-**RVI-TRQGTTELV----NVCSLLTHLRFVQI*NL* 393
           ++KW E PNSV    VSN  +L   +V+  RQ   E+     N   L   ++FV+     
Sbjct: 106 RYKWNEGPNSV---GVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYY 162

Query: 394 MVKIYIVTEL 423
           +++IYI + L
Sbjct: 163 LIQIYIPSGL 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,307
Number of Sequences: 438
Number of extensions: 4349
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)