Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0079
(710 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44740.2 68418.m05484 UMUC-like DNA repair family protein low... 81 7e-16
At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low... 71 6e-13
At5g44750.1 68418.m05485 UMUC-like DNA repair family protein / B... 56 3e-08
At4g09300.1 68417.m01538 expressed protein 37 0.011
At5g44740.1 68418.m05483 UMUC-like DNA repair family protein low... 31 1.00
At3g21170.1 68416.m02674 F-box family protein contains Pfam prof... 29 2.3
At2g34680.1 68415.m04260 leucine-rich repeat family protein cont... 29 4.0
At2g25350.1 68415.m03032 phox (PX) domain-containing protein wea... 29 4.0
At1g02610.1 68414.m00211 zinc finger (C3HC4-type RING finger) fa... 28 5.3
At3g27380.1 68416.m03423 succinate dehydrogenase, iron-sulphur s... 28 7.0
At5g08200.1 68418.m00959 peptidoglycan-binding LysM domain-conta... 27 9.3
At3g60080.1 68416.m06709 zinc finger (C3HC4-type RING finger) fa... 27 9.3
At3g10650.1 68416.m01281 expressed protein 27 9.3
>At5g44740.2 68418.m05484 UMUC-like DNA repair family protein low
similarity to DNA polymerase eta [Homo sapiens]
GI:11463971; contains Pfam profile PF00817:
ImpB/MucB/SamB family
Length = 672
Score = 81.0 bits (191), Expect = 7e-16
Identities = 66/204 (32%), Positives = 99/204 (48%), Gaps = 33/204 (16%)
Frame = +3
Query: 198 IIHIDLDCFYAQVEMVRNPELRDVPLGIQQKNI-----VVTSNYEARNYGVSKCMLVTDA 362
I H+D+DCFY QVE + PELR +P + Q N ++ +YEAR GV + M +A
Sbjct: 14 IAHVDMDCFYVQVEQRKQPELRGLPSAVVQYNEWQGGGLIAVSYEARKCGVKRSMRGDEA 73
Query: 363 LKVCPNLKLV-----NGE-DLHSYRTASGKVFLVL-QGWRCPVEKLGMDENFIDVTSLVE 521
CP ++LV G+ DL+ YR+A +V +L + +C E+ +DE ++D+T E
Sbjct: 74 KAACPQIQLVQVPVARGKADLNLYRSAGSEVVSILAKSGKC--ERASIDEVYLDLTDAAE 131
Query: 522 EKLKNANLNDLIVM----------------GQLYSEPSAECPC--GCHNRLKIAS---QI 638
L +A L ++ G + E C R K+ S I
Sbjct: 132 SMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRDKLLSCGIII 191
Query: 639 ANEMRKKIYDELGYTTCAGIAHNK 710
E+RK++ E +T AGIAHNK
Sbjct: 192 VAELRKQVLKETEFTCSAGIAHNK 215
>At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low
similarity to DNA polymerase kappa [Mus musculus]
GI:14279087; contains Pfam profile PF00817:
ImpB/MucB/SamB family
Length = 785
Score = 71.3 bits (167), Expect = 6e-13
Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 4/150 (2%)
Frame = +3
Query: 201 IHIDLDCFYAQVEMVRNPELRDVPLGIQQKNIVVTSNYEARNYGVSKCMLVTDALKVCPN 380
+H+D+D FYA VE + +P ++ P+ + +++ T+NYEAR +GV M A K+CP+
Sbjct: 106 LHVDMDAFYAAVETLSDPSIKGKPMAVGGLSMISTANYEARKFGVRAAMPGFIARKLCPD 165
Query: 381 LKLVNGEDLHSYRTASGKVFLVLQGWRCPVEKLGMDENFIDVTSLVEEK-LKNANLNDLI 557
L V D Y S V + + +DE ++D+T + E+ L + + +
Sbjct: 166 LIFV-PVDFTKYTHYSDLTRKVFRNYDPHFIAGSLDEAYLDITEVCRERGLSGGEIAEEL 224
Query: 558 VMGQLYSEPSAECPCG-CHNRL--KIASQI 638
+YSE C G NRL K+ S I
Sbjct: 225 -RSSVYSETGLTCSAGVAANRLLAKVCSDI 253
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 606 CHNRLKIASQIANEMRKKIYDELGYTTCAGIAHNK 710
C R +IA E+R +Y E G T AG+A N+
Sbjct: 210 CRERGLSGGEIAEELRSSVYSETGLTCSAGVAANR 244
>At5g44750.1 68418.m05485 UMUC-like DNA repair family protein / BRCT
domain-containing protein low similarity to Rev1S [Homo
sapiens] GI:12483635; contains Pfam profiles PF00817:
ImpB/MucB/SamB family, PF00533: BRCA1 C Terminus (BRCT)
domain
Length = 1102
Score = 55.6 bits (128), Expect = 3e-08
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Frame = +3
Query: 195 SIIHIDLDCFYAQVEMVRNPELRDVPLGIQQKN------IVVTSNYEARNYGVSKCMLVT 356
+IIHIDLDCF+ V + EL D P+ + + + ++NY AR YGV M V
Sbjct: 374 TIIHIDLDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAEISSANYPARAYGVKAGMFVR 433
Query: 357 DALKVCPNLKLVNGEDLHSYRTASGKVFLVLQGWRCPVEKLGMDENFIDVTSL 515
A +CP L +V + +Y ++ +L L DE F+DV+ L
Sbjct: 434 HAKDLCPQLVIV-PYNFEAYEEVLVRIECLLY---IVTSALSCDEAFLDVSDL 482
>At4g09300.1 68417.m01538 expressed protein
Length = 224
Score = 37.1 bits (82), Expect = 0.011
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Frame = +3
Query: 129 MDDRNMESSCSTCNEIDGEHFKSIIHIDLDCFYAQVEMVRNPELRDVPLGIQQKNIVVTS 308
++ RN+E + N ++ E K+ H+ +E++R + + Q+K +
Sbjct: 72 IESRNLEDAIEKLNALNPEIIKTSFHLHQQML---IELIREKKTEEAVAFAQEKLAPLAE 128
Query: 309 NYEARNYGVSK--CMLVTDALKVCPNLKLVNGEDLHSYRTAS 428
EA + K C+LVT+ L CP+ +L + RTAS
Sbjct: 129 ENEALQRELEKTVCILVTEGLPNCPSRELFHNSQW--IRTAS 168
>At5g44740.1 68418.m05483 UMUC-like DNA repair family protein low
similarity to DNA polymerase eta [Homo sapiens]
GI:11463971; contains Pfam profile PF00817:
ImpB/MucB/SamB family
Length = 588
Score = 30.7 bits (66), Expect = 1.00
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 636 IANEMRKKIYDELGYTTCAGIAHNK 710
I E+RK++ E +T AGIAHNK
Sbjct: 107 IVAELRKQVLKETEFTCSAGIAHNK 131
>At3g21170.1 68416.m02674 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 394
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 356 SNEHTFTNSVVPCLVITRHYNVLLLDTERYITEFGVSHHFH 234
SN NSV P + IT H+++ + Y TE + H FH
Sbjct: 69 SNLRGIHNSVAPYVNITCHFSLKEHLSNNYSTEVDIGHVFH 109
>At2g34680.1 68415.m04260 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; identical to cDNA hypothetical protein
(AIR9) mRNA, partial cds GI:3695020
Length = 1661
Score = 28.7 bits (61), Expect = 4.0
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Frame = +3
Query: 363 LKVCPNLKLVNGEDLHSYRTASGKVF------LVLQGWRCPVEKLGMDENFIDVTSLVEE 524
L V P LK N DL A K + + +GW L + F + E
Sbjct: 427 LLVGPTLKKFNDRDLSREEVAIAKRYPPQTALCLREGWEFCKSDLAAESTF----RFLVE 482
Query: 525 KLKNANLNDLIVMGQLYSEPSAECPCGCH 611
+ K+ + ++ PS E PC CH
Sbjct: 483 RWKDTLPSGYLIKEAHVDRPSEEAPCQCH 511
>At2g25350.1 68415.m03032 phox (PX) domain-containing protein weak
similarity to SP|Q9UTK5 Abnormal long morphology protein
1 (Sp8) {Schizosaccharomyces pombe}; contains Pfam
profile PF00787: PX domain
Length = 643
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 237 EMVRN-PELRDVPLGIQQKNIVVTSNYEARNYGVSKCMLVTDALKV 371
E+ R+ E D +QQ+ I+V + EAR S C ++ D LKV
Sbjct: 543 ELTRSLTEKSDTEKLLQQERIIVENTLEARRRLYSDCEILHDRLKV 588
>At1g02610.1 68414.m00211 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 146
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +3
Query: 501 DVTSLVEEKLKNANLNDLIVMGQLYSEPSAECPCGCHNRLKIASQIANEMRKKIYDELGY 680
DV ++E ++ N + + +E E PC C +K A + + ++ DE G
Sbjct: 3 DVVLFIDETYLKSSFNRCRICHEEEAESYFEAPCSCSGTIKFAHR---DCIQRWCDEKGN 59
Query: 681 TTC 689
T C
Sbjct: 60 TIC 62
>At3g27380.1 68416.m03423 succinate dehydrogenase, iron-sulphur
subunit, mitochondrial (SDH2-1) nearly identical to
mitochondrial succinate dehydrogenase iron-sulphur
subunit (sdh2-1) [gi:12049598] from Arabidopsis thaliana
Length = 279
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +3
Query: 207 IDLDCFYAQVEMVRNPELRDVPLGIQQKNIVVTSNYEARNYGVSKCMLVTDALKVCPN 380
+D+ FY Q + + R P + K I+ + A+ G+ +C+L CP+
Sbjct: 149 VDMTNFYNQYKSIEPWLKRKTPASVPAKEILQSKKDRAKLDGMYECILCACCSTSCPS 206
>At5g08200.1 68418.m00959 peptidoglycan-binding LysM
domain-containing protein contains Pfam profile PF01476:
LysM domain
Length = 409
Score = 27.5 bits (58), Expect = 9.3
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -2
Query: 619 SLL*QPHGHSALGSLYSWPITMRSFKFAFFNFSSTRLVTSMKFSSIPSFSTGHR 458
S L P G+S GSL WP + S K + + +TS F +P TG R
Sbjct: 353 SSLQDPDGNSNNGSLSLWPTSKWSLK---PDLLTPAAITSSIFDGLPKPLTGRR 403
>At3g60080.1 68416.m06709 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 306
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 523 SSTRLVTSMKFSSIPSFSTGHRQPCNTKNTLPDAVL*LC 407
SS+ L+ S SIP+ C+T ++ PD+VL LC
Sbjct: 132 SSSSLLKSSDIDSIPTIQISSSLLCSTDDSDPDSVL-LC 169
>At3g10650.1 68416.m01281 expressed protein
Length = 1309
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -2
Query: 523 SSTRLVTSMKFSSIPSFSTGHRQPCNTKNTLPDAVL*LCKSSPFTSFKFGQTLSASVTS 347
S+ +S S P F T + P ++ N+ P SS T+F FG + +A+V+S
Sbjct: 1073 STNSSASSSSTMSSPLFGTSWQAPNSSPNSGPVFSSSFTTSSTPTTFSFGGSSAATVSS 1131
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,151,447
Number of Sequences: 28952
Number of extensions: 309986
Number of successful extensions: 820
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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