Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0078
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048 131 4e-31
06_03_0811 + 24830496-24831194 127 7e-30
02_01_0691 - 5167260-5167937 121 6e-28
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 107 1e-23
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 46 3e-05
01_06_0928 + 33085403-33089224 32 0.35
08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877... 31 0.61
06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518 31 0.61
06_01_0671 - 4899611-4899829,4900870-4901448 30 1.9
11_03_0128 - 10437407-10438049,10438097-10438272 29 2.5
09_06_0228 + 21706118-21706252,21706327-21706406,21706742-217068... 29 2.5
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 29 2.5
08_01_0627 + 5451140-5451839,5452635-5452662,5452730-5452786,545... 29 2.5
06_01_0861 + 6527279-6527582,6527619-6527719,6527817-6528042,652... 29 2.5
10_08_0894 - 21365629-21365766,21365849-21365950,21366042-213662... 28 7.5
08_02_1430 - 27048055-27048408,27049674-27049841,27049927-270500... 28 7.5
11_06_0592 - 25327128-25329566 27 9.9
06_03_1406 - 29949367-29949556,29949753-29949837,29950625-299507... 27 9.9
03_03_0001 + 13611070-13611172,13611812-13611873,13612001-136120... 27 9.9
>01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048
Length = 162
Score = 131 bits (317), Expect = 4e-31
Identities = 69/148 (46%), Positives = 94/148 (63%), Gaps = 4/148 (2%)
Frame = +2
Query: 38 MAPIKVGDQLPAADL--FE-DSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYV 208
MAP+ VGD LP L F+ + +V++ L AGKKVVLF VPGAFTP CS H+PG++
Sbjct: 1 MAPVAVGDTLPDGQLGWFDGEDKLQQVSVHGLAAGKKVVLFGVPGAFTPTCSNQHVPGFI 60
Query: 209 QNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALDLGTNLPP 388
A++LK+ GV +I+ VSVNDP+VM AW + V+ LAD G + KAL L +L
Sbjct: 61 NQAEQLKAKGVDDILLVSVNDPFVMKAWAKSYPENKHVKFLADGLGTYTKALGLELDLSE 120
Query: 389 LG-GFRSKRFSMVIVDSKVQDLNVEPDG 469
G G RS+RF+++ + KV N+E G
Sbjct: 121 KGLGIRSRRFALLADNLKVTVANIEEGG 148
>06_03_0811 + 24830496-24831194
Length = 232
Score = 127 bits (307), Expect = 7e-30
Identities = 72/171 (42%), Positives = 106/171 (61%), Gaps = 7/171 (4%)
Frame = +2
Query: 14 STSHSQLSMAPIKVGDQLPAADL-FEDSPANK---VNICELTAGKKVVLFAVPGAFTPGC 181
+ S S + A I VGD+LP A L + DSP + V + +LTAGKKVVLFAVPGAFTP C
Sbjct: 60 AVSASAPAAATIAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAFTPTC 119
Query: 182 SKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKA 361
++ H+PG+V A +L++ GV + CVSVND +VM AW +V +L+D +G +A
Sbjct: 120 TQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLSDGNGELARA 179
Query: 362 LDLGTNL--PPLG-GFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKIK 505
+ + +L P G G RS+R++++ D V+ LN+E G + S + +K
Sbjct: 180 MGVELDLSDKPAGLGVRSRRYALLAEDGVVKVLNLEEGGAFTTSSAEEMLK 230
>02_01_0691 - 5167260-5167937
Length = 225
Score = 121 bits (291), Expect = 6e-28
Identities = 71/172 (41%), Positives = 102/172 (59%), Gaps = 8/172 (4%)
Frame = +2
Query: 14 STSHSQLSMAPIKVGDQLPAADLFEDSPAN----KVNICELTAGKKVVLFAVPGAFTPGC 181
S + + +A I VGD+LP A L PA+ V + ELTAG+K VLFAVPGAFTP C
Sbjct: 52 SAASASTVVATIAVGDKLPDATLSYFDPADGELKTVTVAELTAGRKAVLFAVPGAFTPTC 111
Query: 182 SKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNT-KGKVRMLADPSGNFIK 358
S+ HLPG+++ A +L + GV I CVSVND +VM AW V +L+D + +
Sbjct: 112 SQKHLPGFIEKAGELHAKGVDAIACVSVNDAFVMRAWKESLGLGDADVLLLSDGNLELTR 171
Query: 359 ALDLGTNL--PPLG-GFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKIK 505
AL + +L P+G G RS+R++++ D V+ LN+E G + S + +K
Sbjct: 172 ALGVEMDLSDKPMGLGVRSRRYALLADDGVVKVLNLEEGGAFTTSSAEEMLK 223
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 107 bits (256), Expect = 1e-23
Identities = 51/111 (45%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Frame = +2
Query: 131 GKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNT 310
GKKVV+F +PGA+T CS+ H+P Y N DKLK+ GV ++CVSVNDPY + W +
Sbjct: 70 GKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPYALNGWAEKLQA 129
Query: 311 KGKVRMLADPSGNFIKALDLGTNL-PPLGGFRSKRFSMVIVDSKVQDLNVE 460
K + D G+F K+LDL +L L G RS R+S + D K++ NVE
Sbjct: 130 KDAIEFYGDFDGSFHKSLDLEVDLSAALLGRRSHRWSAFVDDGKIKAFNVE 180
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 46.0 bits (104), Expect = 3e-05
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Frame = +2
Query: 11 ASTSHSQLSMAPIKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSK- 187
A + S ++M + +GD +P +L DS K+ I + V+LF+ PG FTP C+
Sbjct: 27 AKAAQSFVAMPGLTIGDTVPNLEL--DSTHGKIRIHDFVGDTYVILFSHPGDFTPVCTTE 84
Query: 188 -THLPGYVQNADKLKSDGVAEIVC--VSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIK 358
+ GY + DK + + I C V + ++ + + ++ADPS IK
Sbjct: 85 LAAMAGYAKEFDK-RGVKLLGISCDDVQSHKDWIKDIEAYKPGNRVTYPIMADPSREAIK 143
Query: 359 ALDL 370
L++
Sbjct: 144 QLNM 147
>01_06_0928 + 33085403-33089224
Length = 1273
Score = 32.3 bits (70), Expect = 0.35
Identities = 26/87 (29%), Positives = 39/87 (44%)
Frame = -2
Query: 489 REQDRPVPSGSTFRSWTLLSTMTIENLLERKPPSGGRLVPRSRALMKLPLGSASIRTFPL 310
+E+D + T +W + + K SG LVP S L +L L S SI L
Sbjct: 900 KERDEALVKEDTIEAWLCCHKERMRFIYSAK--SGLPLVPPS-GLCELYLSSCSITDGAL 956
Query: 309 VLC*APQAAITYGSLTDTHTISATPSD 229
LC ++ SLT+ T++ PS+
Sbjct: 957 ALCIGGLTSLRELSLTNIMTLTTLPSE 983
>08_02_1402 -
26786011-26786128,26786263-26786516,26787505-26787732,
26788920-26789759
Length = 479
Score = 31.5 bits (68), Expect = 0.61
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = -3
Query: 494 RRENKTGQCHRAPHSDLGPCCQR*PSRTFWSGNLRAAADWCPGPEP 357
RRE +T H PHSDL P R P RT + + R P P P
Sbjct: 187 RREAETAHPHTQPHSDLSP---RTPRRTSAAASGRLQEKQAPPPLP 229
>06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518
Length = 524
Score = 31.5 bits (68), Expect = 0.61
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Frame = +2
Query: 86 EDSPANKVNICELTAG------KKVVLFAVP---GAFTPGCSKTHLPGYVQNADKLKSDG 238
E P + +CELT +K + F P GAF K P Y + D L G
Sbjct: 145 EGFPYARPPVCELTGDIRISPKEKTMFFVNPSSAGAFDGNGEKKIRP-YARKDDFLLP-G 202
Query: 239 VAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNF 352
V E++ SV+ P + A HN V +A + NF
Sbjct: 203 VVEVIIKSVSSPAIAPACTRTHNVPAVVFSVAGYTDNF 240
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/79 (27%), Positives = 37/79 (46%)
Frame = +2
Query: 35 SMAPIKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQN 214
S + G P L D V++ + G+ VV++ P TPGC+K + +
Sbjct: 114 SSVQVSKGSAAPNFTL-RDQDGRAVSLSKFK-GRPVVVYFYPADETPGCTK-QACAFRDS 170
Query: 215 ADKLKSDGVAEIVCVSVND 271
+K K G AE++ +S +D
Sbjct: 171 YEKFKKAG-AEVIGISGDD 188
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 333 PIPAATSSRLWTWAPICRRSEVSAPKGSRWSSLTA 437
P P A+S L +W C RS +S+P S W TA
Sbjct: 233 PSPTASSESLGSWGSGC-RSHLSSPTCSSWWRTTA 266
>09_06_0228 +
21706118-21706252,21706327-21706406,21706742-21706866,
21706960-21707084,21707162-21707380,21707458-21707580,
21707661-21707761,21707847-21707899,21707972-21708174
Length = 387
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -1
Query: 475 ASAIGLHIQILDLAVNDDHREPFGAETSERRQIGAQVQSLDEVAAGIG*HTH 320
A +G + I+ AV D+ PFG ++S R +G SL G+ TH
Sbjct: 113 AGNLGNLLLIVVPAVCDEDGNPFGKDSSRCRSLGLSYSSLSMALGGLYIWTH 164
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 386 PLGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 502
PL G S F+ +I S +Q +V+ DGT SC + D I
Sbjct: 456 PLEGVGSAYFNELINRSMIQPADVQYDGTVQSCRVHDMI 494
>08_01_0627 +
5451140-5451839,5452635-5452662,5452730-5452786,
5453205-5453874
Length = 484
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -3
Query: 218 LRSVRIPASVF*NIPG*RRPAPQIIQPSFPPSTHKYSPY*RENLRINQQQAADPRP 51
LR + A++ P +P PQ+ PSFP +T S R R + DP+P
Sbjct: 13 LRDAQSAAALSNPNPPEPQPQPQLATPSFPTTTDTASRRRRRRRRRGRGNRHDPQP 68
>06_01_0861 +
6527279-6527582,6527619-6527719,6527817-6528042,
6528132-6528475,6528624-6528989,6529080-6529347,
6529479-6529696
Length = 608
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 152 AVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAW-GAQHNT 310
A+ G P C H+ + K +S V V + YV+A W G+ H++
Sbjct: 140 ALDGTHIPACVPMHMQDRFRGRKKFQSQNVLAAVDFDLRFLYVLAGWEGSAHDS 193
>10_08_0894 - 21365629-21365766,21365849-21365950,21366042-21366284,
21366685-21366813,21366999-21367103,21367196-21367387,
21367486-21367639,21368148-21368209,21368291-21368437,
21368517-21368564,21369091-21369228,21369305-21369451,
21370579-21370665,21370754-21370861,21370941-21371041,
21371870-21371996,21372820-21372936,21373029-21373106,
21373240-21373284,21373637-21373756,21373838-21373964,
21374033-21374253,21374347-21374529,21374772-21374924,
21375051-21375146,21375226-21375331,21375410-21375492,
21375576-21375728,21375819-21376058,21376367-21376414,
21376782-21376928,21377007-21377115,21377200-21377345,
21377715-21377809,21377944-21378049,21378177-21378368,
21378456-21378686,21378772-21378866,21379426-21379529,
21380040-21380284,21380300-21380347,21380376-21380480,
21380630-21380767,21381458-21381649,21381738-21381914,
21382001-21382129,21382203-21382316,21382407-21382746,
21382836-21383064,21383155-21383455,21384311-21384358,
21387963-21388355
Length = 2493
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = -1
Query: 403 AETSERRQIGAQVQSLDEVAAGIG*HTHLSFSVVLSSPSRHHIRVINRHAHYFSNSIRFQ 224
A+ + Q+ Q+++ E+ + ++ +L + + +R N H HYFS I +
Sbjct: 2349 AQQMNQSQLDVQIETATELFRNLVMNSDTEGRYLLLNAIANQLRYPNNHTHYFSFIILYL 2408
Query: 223 F 221
F
Sbjct: 2409 F 2409
>08_02_1430 -
27048055-27048408,27049674-27049841,27049927-27050042,
27050153-27050305,27050850-27050993,27051052-27051211,
27051332-27051970
Length = 577
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -2
Query: 195 KCVLEHPGVKAPGTANNTTFFPAVNSQIFTLLAGESSNKSAAG 67
K VLEHP +K TA N + AV +++ A K A G
Sbjct: 362 KQVLEHPWLKNADTAPNVSLGDAVRARLQQFSAMNKFKKKALG 404
>11_06_0592 - 25327128-25329566
Length = 812
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -1
Query: 622 DKLRKVRASLKVTNAGKIALISFLCYLILQCDITHCLLHFDLIGERTR 479
++L+ + SLK+ A L+ CY L CL + +GE +
Sbjct: 229 EELKDLSNSLKIKGADVAKLVMIFCYSKLPTHCKSCLQYLAAMGEEDK 276
>06_03_1406 -
29949367-29949556,29949753-29949837,29950625-29950791,
29951232-29952049
Length = 419
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 26 SQLSMAPIKVGDQLPAADLFEDSPANKVN-ICELTAGKKVVLFAVPGA 166
S +AP+++G P++ + SPA V+ + VL +PGA
Sbjct: 33 SMADLAPVQIGPSSPSSPMSPASPATPVDAYANAPPPSEDVLLRIPGA 80
>03_03_0001 +
13611070-13611172,13611812-13611873,13612001-13612072,
13612158-13612394,13612473-13612650,13612731-13612863,
13613686-13613845,13613925-13614078,13614159-13614262,
13614354-13614512,13615399-13615467,13615543-13615611,
13615772-13615909,13616044-13616124,13616805-13616933,
13617717-13617864,13618007-13618017,13618094-13618234,
13618314-13618439,13619164-13619220,13619355-13619453,
13619540-13619762,13620236-13620480,13621325-13621438
Length = 1003
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Frame = +2
Query: 83 FEDSPANKVNIC--ELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVC 256
FE P N E GK L G G SK+ P + L+ DG E+ C
Sbjct: 345 FESWPVNSAGSAGAEEGRGKVAALLKQQGVDIKGASKSSAPVDEEVPPLLEGDGKLEVYC 404
Query: 257 VS 262
V+
Sbjct: 405 VN 406
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,280,596
Number of Sequences: 37544
Number of extensions: 462468
Number of successful extensions: 1192
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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