Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0077
         (708 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5ZX43 Cluster: Putative uncharacterized protein; n=1; ...    34   3.0  
UniRef50_O47572 Cluster: NADH-ubiquinone oxidoreductase chain 4;...    33   5.2  
UniRef50_Q8IKG8 Cluster: Rhoptry protein, putative; n=2; Plasmod...    33   6.9  

>UniRef50_A5ZX43 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus obeum ATCC 29174|Rep: Putative
           uncharacterized protein - Ruminococcus obeum ATCC 29174
          Length = 346

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +2

Query: 341 ESRIVDPFANNQMYKISLLSFNIVLLYYLWIIKKVGTLV*VDMYFYEVLYHL 496
           + +I   +A  +MY + LL F + L+Y++WI   +G +  +D  F  ++  L
Sbjct: 8   KQKIKGIYAQYEMYLLPLLKFVLALVYFIWINTNMGYMTALDNIFVVLILSL 59


>UniRef50_O47572 Cluster: NADH-ubiquinone oxidoreductase chain 4;
           n=3; Onchocercidae|Rep: NADH-ubiquinone oxidoreductase
           chain 4 - Onchocerca volvulus
          Length = 410

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 25/76 (32%), Positives = 34/76 (44%)
 Frame = -2

Query: 407 Y*NLVMIFCTFDCLRMDRLFEIPRRQSVFCKIKKFRMLSENLWEFGMDFLTKISSYFFQF 228
           Y N+ M+FC   CL M   F  P   S F    ++ ML+     F + FL     Y   F
Sbjct: 310 YFNVSMLFCLMFCLTMVSNFSFPVSVSFF---SEYLMLNFFSSVFYVGFLFLFFYYLVSF 366

Query: 227 VHTCVALVRFKVG*RV 180
            ++   LV F VG +V
Sbjct: 367 YYSVYILVCFLVGGKV 382


>UniRef50_Q8IKG8 Cluster: Rhoptry protein, putative; n=2;
            Plasmodium|Rep: Rhoptry protein, putative - Plasmodium
            falciparum (isolate 3D7)
          Length = 1455

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 16/64 (25%), Positives = 33/64 (51%)
 Frame = -2

Query: 317  KIKKFRMLSENLWEFGMDFLTKISSYFFQFVHTCVALVRFKVG*RVYKPPSLHIHIRRKA 138
            KIKK+++++ENL +    +   I     + +H     +  K    +  PP +H+H+ + +
Sbjct: 884  KIKKYQLINENLQDCIAGYQKDIQ-ILKENIHNLEKQIELKQIKNIVLPPKVHVHVSKLS 942

Query: 137  RLKN 126
             L+N
Sbjct: 943  SLEN 946


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 697,675,958
Number of Sequences: 1657284
Number of extensions: 13909215
Number of successful extensions: 27299
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27069
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)