Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0077
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    31   0.21 
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    26   6.1  
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          26   6.1  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    25   8.0  

>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 175 SHHHYTFTSEERPD*KIEIIQSTRPSCFRQYVPRRCSQNQ 56
           SHHH+ ++S++      E  +  +P C  +  P+ C   Q
Sbjct: 61  SHHHWEYSSDDDSSDDEESCEKKKPKCCEKKKPKCCESEQ 100


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +2

Query: 359 PFANNQMYKISLLSFNIVLLYYLWIIK 439
           P  N  ++KI+ +S  + +  +LW++K
Sbjct: 355 PMRNMDIFKITAISIGLSIPVFLWLLK 381


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 171 TIITHSHPKKGQTEKL 124
           TIITHSHP+    EK+
Sbjct: 157 TIITHSHPESEPLEKI 172


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +2

Query: 332 AFGESRIVDPFANNQMYKISLLSFNIVLLYYLWIIKKVGTLV*VDM 469
           +FG  +I    A+N  +   ++   +VL+++ W+    GTL+ V++
Sbjct: 256 SFGRGKI----AHNPPHDAGMVYIGVVLIWFAWLCFNSGTLLTVNI 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,033,742
Number of Sequences: 5004
Number of extensions: 64819
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)