Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0077
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)             29   2.8  
SB_28246| Best HMM Match : M (HMM E-Value=0.0007)                      29   4.9  
SB_6551| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      28   8.5  

>SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)
          Length = 583

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -2

Query: 239 FFQFVHTCVALVRFKVG*RVYKPPSLHIHIRRKARLKN*NNSIDTTFMFP 90
           FF     CVA+  F+ G R+Y  PS      RKA +KN  N ID   + P
Sbjct: 221 FFIIDSFCVAVFTFEFGARLYSCPS------RKAFIKNGTNVIDYIGILP 264


>SB_28246| Best HMM Match : M (HMM E-Value=0.0007)
          Length = 1121

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = -1

Query: 357 STIRDSPKAVSLL*NKKVQNALRKSMGVWDGLFDEDF 247
           +++R+   A+ +   +K+++A+RKS  V DG+ + +F
Sbjct: 408 ASLREQLTALEVSQQEKIRDAIRKSQNVLDGIKENEF 444


>SB_6551| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 330

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -3

Query: 625 SICDKSCTELWHTQMHKHVVITNHKLP*FYCLISGFANCLGLM*VIQHFVKIHVNSN 455
           ++C+K+  +L + + H HV   N      YC +S    C     +  H   +H N N
Sbjct: 278 ALCEKAFNKLSNLKFHMHVHTDNSPYRCKYCKVSFSRRC----DLKSHIANVHENQN 330


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,881,540
Number of Sequences: 59808
Number of extensions: 456131
Number of successful extensions: 778
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)