Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0077
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z67882-2|CAA91799.1| 1318|Caenorhabditis elegans Hypothetical pr...    27   9.9  
X86403-1|CAA60157.1|  575|Caenorhabditis elegans nicotinic acety...    27   9.9  
U23525-1|AAK71377.1|  575|Caenorhabditis elegans Acetylcholine r...    27   9.9  

>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical
           protein B0207.5 protein.
          Length = 3279

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 456 FELTCIFTKCCITYIKPRQLAKPEIRQ 536
           +E  CI+TK   +YIKP +L+K E ++
Sbjct: 368 YERKCIWTKLDCSYIKPDELSKKEYKK 394


>Z67882-2|CAA91799.1| 1318|Caenorhabditis elegans Hypothetical protein
            F22E10.1 protein.
          Length = 1318

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = -2

Query: 305  FRMLSENLWEFGMDFLTKISSYFFQFVHTCVALVRFKVG*RVYKPPSL--HIHIRRKARL 132
            +++  ENL +   D   KI+    + V T   L   +     YK   L  H    RK+ +
Sbjct: 922  YKIARENLKQIRKDEAGKIAIEIIESVKTIQLLTSTQRFLTHYKDAQLVQHKSEMRKSYI 981

Query: 131  KN*NNSIDTTFMF 93
            ++ NN+I  TFM+
Sbjct: 982  QSVNNAISQTFMY 994


>X86403-1|CAA60157.1|  575|Caenorhabditis elegans nicotinic
           acetylcholine receptor protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +2

Query: 344 SRIVDPFANNQMYKISLLSFNIVLLYYLWIIKKVGTLV*VDMYFYEVLYH 493
           S+I+ P +N     I L+   ++L + L I   VGT+V V++YF   L H
Sbjct: 315 SKILPPTSN-----IPLMGKYLLLAFVLNITAVVGTVVIVNIYFRSALSH 359


>U23525-1|AAK71377.1|  575|Caenorhabditis elegans Acetylcholine
           receptor protein 2 protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +2

Query: 344 SRIVDPFANNQMYKISLLSFNIVLLYYLWIIKKVGTLV*VDMYFYEVLYH 493
           S+I+ P +N     I L+   ++L + L I   VGT+V V++YF   L H
Sbjct: 315 SKILPPTSN-----IPLMGKYLLLAFVLNITAVVGTVVIVNIYFRSALSH 359


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,697,985
Number of Sequences: 27780
Number of extensions: 361998
Number of successful extensions: 731
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)