Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0077
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.70 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.8  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 572 CRHYQSQTTLILLPNFRFCQ 513
           C++Y   TTL+ L  + FC+
Sbjct: 35  CKNYDHPTTLLKLKRYLFCE 54


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 137 RLKN*NNSIDTTFMFPPVCPSTLFSESIS 51
           RL+N  N IDT  MF  V  S LFS+ ++
Sbjct: 406 RLRNGENPIDTCEMFDSV--SILFSDVVT 432


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 262 KSIPNSHRFSESILNFFILQKTDCLRG 342
           KSI N+ +   S L FFIL   D   G
Sbjct: 539 KSISNNEQVKVSALGFFILISQDAKFG 565


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 262 KSIPNSHRFSESILNFFILQKTDCLRG 342
           KSI N+ +   S L FFIL   D   G
Sbjct: 539 KSISNNEQVKVSALGFFILISQDAKFG 565


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,565
Number of Sequences: 438
Number of extensions: 4094
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)