Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0077
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR...    28   5.3  
At3g59410.1 68416.m06626 protein kinase family protein low simil...    27   9.2  

>At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1304

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 273  WDGLFDEDFKLFFSVC 226
            WD L+D+D+K +F  C
Sbjct: 1185 WDALYDDDYKNYFKFC 1200


>At3g59410.1 68416.m06626 protein kinase family protein low
           similarity to GCN2 eIF2alpha kinase [Mus musculus]
           GI:6066585; contains Pfam profiles PF03129: Anticodon
           binding domain, PF00069: Protein kinase domain
          Length = 1241

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
 Frame = -3

Query: 601 ELWH---TQMHKHVVITNHKL 548
           ELWH   T M +HV++TN KL
Sbjct: 669 ELWHPFGTAMERHVILTNLKL 689


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,396,380
Number of Sequences: 28952
Number of extensions: 323732
Number of successful extensions: 575
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)