Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0075
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S... 32 0.086
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac... 32 0.086
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 30 0.35
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 29 0.80
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ... 27 2.4
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 27 3.2
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 26 4.3
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 26 4.3
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c... 25 7.5
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 25 7.5
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 7.5
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 25 7.5
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 25 9.9
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc... 25 9.9
>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 31.9 bits (69), Expect = 0.086
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -1
Query: 502 VKHVYIVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSFHVVLD--GLRGAVRVYSA 329
VK + KR F+ + H+ + + + ++ + F+VV+D G+R A R
Sbjct: 86 VKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQR 145
Query: 328 ARVG 317
RVG
Sbjct: 146 GRVG 149
>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 174
Score = 31.9 bits (69), Expect = 0.086
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -1
Query: 502 VKHVYIVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSFHVVLD--GLRGAVRVYSA 329
VK + KR F+ + H+ + + + ++ + F+VV+D G+R A R
Sbjct: 86 VKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQR 145
Query: 328 ARVG 317
RVG
Sbjct: 146 GRVG 149
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 29.9 bits (64), Expect = 0.35
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 225 PSHC-RPCLHPEIAWQMQPRHTSVTGGSSETSAKQTPATNSNAQ 97
PSH R LHP ++ Q QP S + G ++ + +Q P+ + +Q
Sbjct: 54 PSHLPRSTLHPLLSQQQQPAQQSPSLGPAQQNIQQPPSVSIASQ 97
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 28.7 bits (61), Expect = 0.80
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = -1
Query: 487 IVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSFHVVLDG---LRGAVRVYSAARVG 317
I +R AG + SLL + VI V+H ++V F VL G + G V + + R G
Sbjct: 252 IKQRLKAGRVIRSLLATTNYVIVVEHDLSVLDYLSDFVCVLYGVPSMYGVVTLPYSVREG 311
Query: 316 I 314
I
Sbjct: 312 I 312
>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 251
Score = 27.1 bits (57), Expect = 2.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 413 VNCYDYMAIHKKGGYGCTGELP 478
+N DY+ ++ GGYGC+ + P
Sbjct: 105 LNPSDYVIVYIPGGYGCSFDFP 126
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 164 LPSQGGVPKHRRNRLRQP 111
L +G + KHR+NRLR+P
Sbjct: 90 LKDEGKLGKHRKNRLRRP 107
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -2
Query: 231 VSPSHCRPCLHPEIAWQMQPRHT 163
VS HC C H E W R+T
Sbjct: 204 VSLKHCEDCFHWEAVWSSITRNT 226
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -3
Query: 188 PGKCSRDTLPSQGGVPKHRRNRLRQP-TATHKPDHSRSHCVGNTQTKKYY 42
P S T +QG +P H +L T +P+ RS+ GN + K Y
Sbjct: 54 PNSSSNSTPANQGSLPSHTNPQLYSSITRKERPELFRSYS-GNPRLSKPY 102
>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 679
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/44 (25%), Positives = 19/44 (43%)
Frame = -1
Query: 193 DSLANAAETHFRHRGEFRNIGETDSGNQQQRTNLITAEAIASEI 62
D L F E+R++ + GN N + E++A E+
Sbjct: 447 DELLRVRSAVFVMEEEYRSLNDITEGNASPDQNEVAEESVAEEV 490
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.4 bits (53), Expect = 7.5
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Frame = -2
Query: 249 MRKRPHVS--PSHCRPCLHPEIAWQMQPRHTSVTGGSSETSAKQTPATNSNAQT*SQPKP 76
M PHV P+ P + P + QM P + G + + P TNS S P P
Sbjct: 412 MPSMPHVQGFPAPFPPFMMPGLP-QMPPMMMNAIAGQVYHNNRNPPRTNSRPSNASVPPP 470
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 165 TSVTGGSSETSAKQTPATNSNAQT*SQPKPLRRKYTNKKILLKNDV 28
TSV +S TSA TP T++N+ T + Y +L + V
Sbjct: 376 TSVNS-TSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSV 420
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 165 TSVTGGSSETSAKQTPATNSNAQT*SQPKPLRRKYTNKKILLKNDV 28
TSV +S TSA TP T++N+ T + Y +L + V
Sbjct: 490 TSVNS-TSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSV 534
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 430 VVIAVDHSVAVAVLAKSFHVVLDGLRGAVRVYSAARVG 317
+VI DH + V VLAK+ +++ A Y A R+G
Sbjct: 279 LVIISDHFM-VPVLAKAIRTIIEAPEDASATYFAIRLG 315
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +1
Query: 64 FPTQWLRL*SGLCVAVGCRSLFRRCFGTP-PCDGSVSRLHLPGY 192
FP + G +A GC ++F F TP C G V G+
Sbjct: 166 FPAAMIARKGGAALAAGCTAIFLPAFRTPYVCLGLVRLAQEAGF 209
>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 288
Score = 25.0 bits (52), Expect = 9.9
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -2
Query: 258 PHVMRKRPHVSPSHCRPCLHPEI 190
PH+++K ++ H PC+H E+
Sbjct: 241 PHLVQKSYYLQNRHVFPCVHWEV 263
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,787
Number of Sequences: 5004
Number of extensions: 63674
Number of successful extensions: 172
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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