Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0073
         (592 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7RV25 Cluster: Predicted protein; n=1; Nematostella ve...    34   2.2  
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    33   5.0  
UniRef50_UPI000150A1C8 Cluster: hypothetical protein TTHERM_0029...    32   8.7  

>UniRef50_A7RV25 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 342

 Score = 34.3 bits (75), Expect = 2.2
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +1

Query: 208 FLNFVIVTYFGEQN*SRFSYMFTKSFACC 294
           F NFVI   F E+  S F Y F+K F CC
Sbjct: 289 FANFVIFCVFTEKMRSHFKYWFSKIFPCC 317


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 33.1 bits (72), Expect = 5.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 308 DPVHVAM*SRHPRSYVNYQAHRHSPLSSSPDRLSGTRFRSDGRF 439
           +  H  + S     +     HR  PLS SPD LSG+RFR+   +
Sbjct: 372 EKAHQVLASLKTTGHSTENEHRCCPLSFSPDLLSGSRFRTGAEY 415


>UniRef50_UPI000150A1C8 Cluster: hypothetical protein
           TTHERM_00299770; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00299770 - Tetrahymena
           thermophila SB210
          Length = 326

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 14/40 (35%), Positives = 27/40 (67%)
 Frame = +2

Query: 56  NIRKGEKVKISKSAHSRFWFDNDDIENRQLDEVDYQINKR 175
           N RK +K K  ++ ++    ++DD+ N+ L+E++ QINK+
Sbjct: 248 NKRKQQKNKKEQAQNTLVIHEDDDLANQNLEELEQQINKQ 287


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 563,690,234
Number of Sequences: 1657284
Number of extensions: 11034794
Number of successful extensions: 23323
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23316
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41073165837
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)