Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0073
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    30   0.22 
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   3.6  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    25   6.2  

>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 199 IFWFRYIGPFVYLIIDFIKLPI 134
           I+W +Y+GPF YLI+ +  L I
Sbjct: 336 IWWLKYLGPFSYLILYYFFLDI 357


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 480  EFANTSPSKSSASRNLPSDRNRVPLRRSGEL 388
            EF    P   S   NLPS +   P +RSG++
Sbjct: 1399 EFTGLKPLSPSKISNLPSSQPGSPSKRSGKM 1429


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 436 STIGSESRSTETIRRATQWAVSMSLVIY 353
           STIG   R  +  RR  QWA ++  +IY
Sbjct: 604 STIGQVRRQLQQGRRLYQWARNIHYLIY 631


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,352,136
Number of Sequences: 5004
Number of extensions: 46445
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)